Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51770 208 / 2e-62 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT5G58550 127 / 5e-34 EOL2 ETO1-like 2 (.1.2) AT4G02680 102 / 2e-25 EOL1 ETO1-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002206 [exp] 218 / 8e-67 AT3G51770 1089 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012238 [exp] 216 / 6e-66 AT3G51770 1092 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010040 [exp] 192 / 2e-63 AT3G51770 165 / 3e-48 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022660 [exp] 207 / 5e-62 AT3G51770 1231 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031289 [exp] 130 / 8e-35 AT3G51770 1083 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031859 [exp] 124 / 7e-33 AT3G51770 1088 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022084 [exp] 101 / 1e-24 AT4G02680 1267 / 0.0 ETO1-like 1 (.1) Lus10010041 [exp] 68 / 6e-15 AT3G51770 76 / 3e-17 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10026455 [exp] 56 / 4e-10 AT3G51770 63 / 2e-12 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G123800 [exp] 202 / 2e-60 AT3G51770 1415 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.006G103400 [exp] 194 / 1e-57 AT3G51770 1399 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.001G280100 [exp] 169 / 8e-49 AT3G51770 1192 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.009G075300 [exp] 166 / 2e-47 AT3G51770 1206 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.005G214400 [exp] 84 / 6e-19 AT4G02680 1264 / 0.0 ETO1-like 1 (.1) Potri.002G048300 [exp] 84 / 8e-19 AT4G02680 1293 / 0.0 ETO1-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012472 pacid=23145780 polypeptide=Lus10012472 locus=Lus10012472.g ID=Lus10012472.BGIv1.0 annot-version=v1.0 ATGATCCTACCGCGTCTGCATGTCTTCCGCGGGCACCCTGACCCGAAGATGCTCTGGCGGAGCCTCCGTTCGGCACGGCAACACACCATCGACGTCCACT CCAAAATCGTGCTCGCTTCCTGGCTGAGATTCGAGAGGAGAGAAGACGAGCTGATCGGTACTTTGGCGATGGATTGTTGTGGGAGAAATATCAAATGCCC TAAGTCATGCTGGATTTCTGGTTACGATCCTGAATGTGCAAATGATCCTTGCAGCTGTTCTTCGCGATCGGACAGCGATGATGTTGAATTGATCAGAGAG GAATGTTCGACTTCCTCCTCCGACGAAGCGGATATTTCGTTCTGCATTAGCGAAGAAGAGATTCATTGCAATAGGTACAAGATCGCATCGATTTCCAGGC CATTTAAGGAAATGTTGTATGGAGATTTGACGGAATCAAGAAGGGGGGAGATATACTTCTCCATGAATTCGATATCCGCGGAAGGAATGAAGGCAGTAGA AAGTTTCAGCAGGACGAAGAAGTTAGCCATTGTTGATCATCTACTTTTACTTCTGGAGATTCTATCATTCGCGAACCGATTTATGATTCTCGATTAG
AA sequence Show only first row Show all	>Lus10012472 pacid=23145780 polypeptide=Lus10012472 locus=Lus10012472.g ID=Lus10012472.BGIv1.0 annot-version=v1.0 MILPRLHVFRGHPDPKMLWRSLRSARQHTIDVHSKIVLASWLRFERREDELIGTLAMDCCGRNIKCPKSCWISGYDPECANDPCSCSSRSDSDDVELIRE ECSTSSSDEADISFCISEEEIHCNRYKIASISRPFKEMLYGDLTESRRGEIYFSMNSISAEGMKAVESFSRTKKLAIVDHLLLLLEILSFANRFMILD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012472 [exp]	0	1
AT1G01970			Tetratricopeptide repeat (TPR)...		Lus10015864 [exp]	2.0	0.8218
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10025653 [exp]	2.4	0.8331
					Lus10026028 [exp]	3.3	0.7890
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10009257 [exp]	3.9	0.7874
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10010041 [exp]	8.0	0.7873
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10022111 [exp]	8.7	0.8034
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10028842 [exp]	10.8	0.8043
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	13.0	0.8006
AT5G20300		Toc90	translocon at the outer envelo...		Lus10004619 [exp]	13.0	0.7884
AT5G15270			RNA-binding KH domain-containi...		Lus10033556 [exp]	14.7	0.7944

Compare expression of checked genes

Lus10012472 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.