Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77020 61 / 1e-10 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39150 50 / 5e-07 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT1G21080 49 / 9e-07 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT1G76700 47 / 5e-06 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G21510 45 / 2e-05 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010039 [exp] 367 / 5e-129 ND / Lus10029744 [exp] 86 / 4e-19 AT1G77020 452 / 6e-159 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10042774 [exp] 84 / 2e-18 AT1G77020 497 / 1e-176 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10030143 [exp] 66 / 4e-12 AT1G79580 279 / 1e-91 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10013198 [exp] 54 / 4e-08 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10030713 [exp] 53 / 8e-08 AT1G21080 573 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10017980 [exp] 49 / 1e-06 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10041972 [exp] 48 / 4e-06 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10028809 [exp] 45 / 3e-05 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G185800 [exp] 75 / 2e-15 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G074600 [exp] 70 / 1e-13 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.009G119800 [exp] 52 / 1e-07 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.004G158300 [exp] 49 / 2e-06 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.005G260400 [exp] 44 / 6e-05 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G000300 [exp] 43 / 0.0001 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02902 [flax] [poplar] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10012473 pacid=23145777 polypeptide=Lus10012473 locus=Lus10012473.g ID=Lus10012473.BGIv1.0 annot-version=v1.0 ATGATGGATCCCATAGTTGTGTTTGGTCTCCTCTTTGGAAGTGAATTGTTAGAGGACTACATTGGTCATCTATCAACTGCATCCATGGCGGCTTCTTCTG ATTTGTCTGGTGAAGCTGACATTCCGGATAAGCTCCATGGAAAACTCAAGTTCGAAGATATCATAAAGAAGGTATCATGTTACATATTTGACCGAGAACT CCCCATGGATGAAGTTTTGATCCAACACGATGGGTTAAAATGTGATCGCATTGCGCTTTGGACGTTGATCGCTGATACATGGTTGGATACAAAGGATGAA ACAATGAATAAAGGGCTGACACCTGAGAAAGCATTTCTGGACTACCAATTCACCTTTCTATCTGGCGCTGCTAATTGTCAAGAGGTTTACTTGCCAATGC GTGATAAGACCCATTGGTATTTAGTAGTCATTTCCATACCAAAAATAAAAGTGTACATTGCGGATTGTTCAGCTGATTGGGAGAAGAACGAGCAGCGCCG ACGTAAAGAAACCTCTTCCATGGTGGAGTTCATATGCAAACTCTTCAAGTTAGTGTACACCAACACTGGATCACCAAACGTATTCCCACCTAATAAGGAC TTTGAATTATCTTTCACACCGCCTTATGGATTAATGGATCCGAAGGAGCTTGCAGTGGACCTAGTGATGGGGTTCACAAATGTCAAAAGGAAAGAAGTGT TGATGAAGGTTGATGAACTACGCAGGAAGAAAGTGTCTCGCCGTTTAAATTTGAGCAGTTGA
AA sequence Show only first row Show all	>Lus10012473 pacid=23145777 polypeptide=Lus10012473 locus=Lus10012473.g ID=Lus10012473.BGIv1.0 annot-version=v1.0 MMDPIVVFGLLFGSELLEDYIGHLSTASMAASSDLSGEADIPDKLHGKLKFEDIIKKVSCYIFDRELPMDEVLIQHDGLKCDRIALWTLIADTWLDTKDE TMNKGLTPEKAFLDYQFTFLSGAANCQEVYLPMRDKTHWYLVVISIPKIKVYIADCSADWEKNEQRRRKETSSMVEFICKLFKLVYTNTGSPNVFPPNKD FELSFTPPYGLMDPKELAVDLVMGFTNVKRKEVLMKVDELRRKKVSRRLNLSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10012473 [exp]	0	1

Compare expression of checked genes

Lus10012473 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.