Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21540 1017 / 0 transducin family protein / WD-40 repeat family protein (.1) AT5G16750 102 / 6e-22 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G08390 89 / 8e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 84 / 2e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 87 / 3e-17 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G13480 86 / 5e-17 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 86 / 5e-17 TAF5 TBP-associated factor 5 (.1) AT1G61210 86 / 6e-17 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 82 / 1e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 77 / 2e-14 PRL1 pleiotropic regulatory locus 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023903 [exp] 1390 / 0 AT3G21540 1223 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10033802 [exp] 889 / 0 AT3G21540 914 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10020214 [exp] 96 / 4e-20 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026837 [exp] 94 / 2e-19 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10001301 [exp] 93 / 5e-19 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10039636 [exp] 88 / 1e-18 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 88 / 2e-18 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10007449 [exp] 89 / 7e-18 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10041007 [exp] 89 / 8e-18 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121100 [exp] 1136 / 0 AT3G21540 1246 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.018G020200 [exp] 93 / 4e-19 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 90 / 2e-18 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.001G026800 [exp] 90 / 3e-18 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.T125206 [exp] 88 / 1e-17 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G197900 [exp] 88 / 2e-17 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 88 / 2e-17 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 87 / 3e-17 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G002300 [exp] 87 / 4e-17 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 82 / 9e-17 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF04003 [flax] [poplar] Utp12 Dip2/Utp12 Family
Representative CDS sequence Show only first row Show all	>Lus10012475 pacid=23145786 polypeptide=Lus10012475 locus=Lus10012475.g ID=Lus10012475.BGIv1.0 annot-version=v1.0 ATGGTGAAATCATATCTTAGGTACGAGCCTCGAGCATCGTTCGGGGTTATAGCATCAGGCGAGTCGAACATAGCCTACGACAGCTCCGGCAAGTACCTGC TAGCTCCGGCGCTCGAGAAGGTTGGAGTTTGGCACGTCAGGCAAGGAATATGCTCTAGGACGCTAGAGCCTTCTTCAGCTTCTCGCGCGGGGCCTTCTCT TGCTGTAACGCACATAGCCTCTTCTTCTACTTCTCTGGTAGCAAGTGGTTATGCCGACGGTTGTATAAGAATTTGGGATAGTGATAAGGGGACCTGTGAG ACCACGTTGAATGGCCACAAAGGTGCAATAACTGTTCTGCGGTACAATAAGAATGGTGCTCAGCTTGCATCTGGTAGTAAAGATAATGATATCATATTGT GGGATGTGGTTGGGGAGGCTGGCCTCTTTCGCCTTCGAGGACATCGTGACCAGGTTACTGGCCTTGTGTTTCTGGAGTCTGGGAAGAAATTAGTGAGTTC TTCCAAAGACAAATTTATGCGGGTGTGGGATCTGGAAACACAGCATTGTGTGCAAATAATTAGTGGTCATCATAGCGAGATTTGGTCGATTGATGTCGAT CGAGAGGAAAGATACTTGGTTAGTGGTTCTGCAGACCCTGAACTTCGGTTTTACATTATTAAGCATGACTTGGAAAACAATCAAGGTGACAAAGGGGATG GCAACAAGTGGGAAGTTTTGAAACTCCTTGGTGAAATCCAGAGGCCAACAAAAGATAGGGTTGCAACTGTGAGGTTCAATATGTCAGGAACCTTGCTTGC TTGTCAATCAGCAGGCAAGATGGTTGATGTATACAATGTCCTTGATGATGCTGAAGCAAAGCGCAAGGCTAAACGTAGGGTTCACAGGAAGAAGGAAAAG AAGTCTTCAAAAGGAGCAGTTGAGGTCACTGAAAATGATAAAGACCTTGCTGCAGAAGAAGACGGGAAAAGCCCAGTGATTACTGTGATTGACATTTTTA AGCTTCTCCAAACCATCCGAGCTGGAAAAAAAGTGTGCTCCATTTCCTTCAGCCCGACTACTACTAAGAACTCATTGGCTACATTGGCGTTGTCATTGAA TAATAACTTATTGGAGTTCTATTCTATAGATAGCAATACAAACACAAAAAGCCTAGCTCTTGAGCTACAGGGGCACAGGTCTGATGTTAGGAGTCTGACA CTTACTTCAGACAACAGTCTTTTGATGTCCACCAGTCACGATGCAGTAAGGATTTGGAATCCCAGTACTGGTTCTTGTCTTCGAACTATTGAATCTGGAT ATGGACTATGTGGATTATTTGTTCCTAAGAACAGATACGCACTTGTCGGGACAAAATCTGGCGCTGTTGAAATCATAGATATTGGCAGTGCCACGAGAGC TGAAGTAGTAGAAGCTCACGGTCGCGCCATCCAGTCAATTGCTGCTATTCCAAATGAAAATGGTTTTGTAACAGGAAGTGCAGACCACGATGTTAAGTTT TGGGAGTATGAAATGAAGCAGAAACCTGGTCAGGATACGAAGCAGCTAACCGTATCTAATGTCAGGTCTTTGAAGATGAATGATGACGTTCTAGTGGTTG CAGTTGACCCTGATGCTAAATATATTGCTGTTGCCTTGTTAGATAACACAGTGAAGGTTTTCTTCATGGATTCTCTCAAGCTCTTTCTCACATTATACGG TCACAAGCTACCTGTAATGTGCATGGATATTTCTTCAGATGGAGAGTTGATTGTTACTGGCTCAGCTGACAAAAACTTGAAGATTTGGGGTTTGGACTTT GGTGACTGTCACAAATCTCTTTTCGCTCATAACGATAGTGTCATGGCAGTTAAATTTGTTGCCAACACTCACTATATGTTCAGTGTCGGAAAAGATAAAC TCGTAAAGTACTGGGATGCCGACAAGTTTGAGGAGCTTTTGTCACTCGATGGGCATCATGCTGAAATTTGGTGTCTTGCAATCAGCAGCCGTGGTGACTT TCTTGTCACGGGATCTCATGACCGATCCATACGACGTTGGGATCGTACTGACGAGCCCTTTTTCATCGAGGAAGAGAAGGAGAAAAGGTTGGAAGAAATG TTTGAAGCTGATCAGGAAAATCCATTTGAAAACAGATCTGCACCCAAGGAAGAGATCCCGGAAGAAGGAGCAGTTGCCTTGGCTGGGAAGAAAACTCAAG AAAGTCTCACGGCCACCGATGTGATTGTCGAAGCACTAGACGTAGCAGAAGACGAGTTGAGCCGTATTGCTGAACATGAAGTCGAGTTAGTCTGCAGAAT TGCAACGGTACTGTTGCAGATCAACTTTAACCAGCTAGTCAGCACTCCTGCTTCTAGACCTATTTTGACTGTGCTCAAGGATGAACTCCATTTAAGAGTC AAGGAATGCAAAGACATTCTTGGTTTCAATCTAGCAGCAATGGATCATCTGAAGCAAATCATGGCCTCGAGATCAGACGCACTCTTCCAAGATGCAAAGG AAAAGCTCCAGGAAATCCTGTCGCAGCGATAG
AA sequence Show only first row Show all	>Lus10012475 pacid=23145786 polypeptide=Lus10012475 locus=Lus10012475.g ID=Lus10012475.BGIv1.0 annot-version=v1.0 MVKSYLRYEPRASFGVIASGESNIAYDSSGKYLLAPALEKVGVWHVRQGICSRTLEPSSASRAGPSLAVTHIASSSTSLVASGYADGCIRIWDSDKGTCE TTLNGHKGAITVLRYNKNGAQLASGSKDNDIILWDVVGEAGLFRLRGHRDQVTGLVFLESGKKLVSSSKDKFMRVWDLETQHCVQIISGHHSEIWSIDVD REERYLVSGSADPELRFYIIKHDLENNQGDKGDGNKWEVLKLLGEIQRPTKDRVATVRFNMSGTLLACQSAGKMVDVYNVLDDAEAKRKAKRRVHRKKEK KSSKGAVEVTENDKDLAAEEDGKSPVITVIDIFKLLQTIRAGKKVCSISFSPTTTKNSLATLALSLNNNLLEFYSIDSNTNTKSLALELQGHRSDVRSLT LTSDNSLLMSTSHDAVRIWNPSTGSCLRTIESGYGLCGLFVPKNRYALVGTKSGAVEIIDIGSATRAEVVEAHGRAIQSIAAIPNENGFVTGSADHDVKF WEYEMKQKPGQDTKQLTVSNVRSLKMNDDVLVVAVDPDAKYIAVALLDNTVKVFFMDSLKLFLTLYGHKLPVMCMDISSDGELIVTGSADKNLKIWGLDF GDCHKSLFAHNDSVMAVKFVANTHYMFSVGKDKLVKYWDADKFEELLSLDGHHAEIWCLAISSRGDFLVTGSHDRSIRRWDRTDEPFFIEEEKEKRLEEM FEADQENPFENRSAPKEEIPEEGAVALAGKKTQESLTATDVIVEALDVAEDELSRIAEHEVELVCRIATVLLQINFNQLVSTPASRPILTVLKDELHLRV KECKDILGFNLAAMDHLKQIMASRSDALFQDAKEKLQEILSQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21540			transducin family protein / WD...		Lus10012475 [exp]	0	1
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10023095 [exp]	3.5	0.9366
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10024454 [exp]	4.0	0.9255
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	9.9	0.9258
AT5G51540			Zincin-like metalloproteases f...		Lus10031136 [exp]	10.2	0.8741
AT3G20150			Kinesin motor family protein (...		Lus10016589 [exp]	11.0	0.9269
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	12.0	0.9230
AT3G19740			P-loop containing nucleoside t...		Lus10010204 [exp]	13.2	0.8859
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	14.7	0.9145
AT5G14520			pescadillo-related (.1)		Lus10000357 [exp]	15.2	0.9060
AT5G17160			unknown protein		Lus10038036 [exp]	16.4	0.9194

Compare expression of checked genes

Lus10012475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.