Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14520 498 / 2e-175 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 489 / 3e-172 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G47330 345 / 3e-114 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT5G52790 328 / 9e-108 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 301 / 2e-97 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT1G03270 300 / 4e-97 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14230 298 / 3e-96 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G55930 57 / 1e-08 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT3G13070 56 / 3e-08 CBS domain-containing protein / transporter associated domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020494 [exp] 583 / 0 AT2G14520 538 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10005259 [exp] 536 / 0 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 455 / 8e-161 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10032715 [exp] 359 / 1e-119 AT1G47330 646 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039289 [exp] 350 / 3e-116 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027528 [exp] 349 / 6e-116 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10034024 [exp] 322 / 1e-105 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10004429 [exp] 321 / 6e-105 AT4G14230 654 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012375 [exp] 317 / 1e-103 AT1G03270 627 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G288000 [exp] 529 / 0 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.009G082300 [exp] 516 / 0 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 427 / 8e-148 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.017G147900 [exp] 370 / 5e-124 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G196900 [exp] 352 / 2e-116 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.008G202100 [exp] 317 / 1e-103 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.010G030200 [exp] 317 / 2e-103 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.002G260401 [exp] 55 / 1e-09 AT1G47330 58 / 3e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G362100 [exp] 54 / 1e-07 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF01595 [flax] [poplar] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012476 pacid=23145802 polypeptide=Lus10012476 locus=Lus10012476.g ID=Lus10012476.BGIv1.0 annot-version=v1.0 ATGGCGGTGGAGTACAGGTGCTGTGACACTGAATTCTTCCTTCAGATTGCGATAATTGTGCTGCTGGTGTTATTCGCCGGTCTCATGTCCGGCTTAACTT TGGGGCTAATGTCCATGAGCCTCGTCGATCTTGAAGTCGTGGCTAAATCCGGAAAACCTAAGGACCGCAAATACGCTGCTAAACTGCAACATGTATCAAC AAATGCACCCAGTGTCACCTTCCTGTACGATGATTCTGATAGCTTATTTGACGTCATTACAGAAAGGATACTGCCAGTTGTTAAAAATCAGCACCTAATG CTCTGCACACTCCTCATTTGCAATGCGGCTGCCATGGAGGCTCTTCCTATTTTCCTGGATAAGCTGGTTACTGCATTGGGTGCCGTTCTTATTTCAGTCA CTCTGCTTCTTCTGTTTGGCGAGATTTTGCCACAGGCTTTTTGCTCTAGATACGGGCTAGCAATTGGTGCTACGGTAGCCCCATTCGTTCGCGTCCTTGT TTGGATATGCTTTCCTGTTGCCTATCCAATAAGCAAGGTTCTAGATTATGTTCTGGGTCATGAACATGTTGCTCTTTTCCGAAGAGCTGAACTGAAAACA CTTGTAAATATGCACGGGAACGAGGTAGGCTGGAAAGGTGGAGAGCTCACCCATGATGAGACAACAATTATTGCTGGAGCTCTAGAGCTCACAGAGAAAA CAGCAAGCGATGCAATGACTCCAATCTCCGATACGTTCGCTATTGATATCAATGCTAAGCTTGACCGTGACATGATGAACTTGATACTAGAGAAAGGACA CAGTCGAGTCCCAGTATATTATGAGCAACCTACAAACATCATTGGACTCATCCTGGCCAAAAATTTGTTGGCAATTCATCCAGAAGACGCAGCGCCTGTG AAGAACGTGACAATACGCAGAATACCAAGGGTCGAGTTACAAAAGGGTCACAGTCATATGGCTGTAGTGGTGAGGAAGTACAACAAAGCAGAACAGCAAC AGCAACAACAACAGTTGATGCCTGCCGTCAGTAGTTCGACGGTTAAAGAAGTGAGGGTGGACGTGGACGGGAAGGCAAGTCAAGAGAAGTCATATAGAAG TAGGAGCGCATCATTTCATAAATGGAAGAGCTTTGCCAACAGCAGCAACAGGTCATTGAAGAGTTCACATAGCAAGAAAAGGGTGAAGGACGAAGTTGAC TCCGACATCCTCAAAATGGACGGATACCTCCCGACTCTTCCCGAGGAAGAAGAAGCCATCGGACTCATAACAATGGAAGATCTCATCGAAGAACTTTTAC AGGAGGAGATCTACGATGAAACGGACCACCACTGCGAAGAGTAG
AA sequence Show only first row Show all	>Lus10012476 pacid=23145802 polypeptide=Lus10012476 locus=Lus10012476.g ID=Lus10012476.BGIv1.0 annot-version=v1.0 MAVEYRCCDTEFFLQIAIIVLLVLFAGLMSGLTLGLMSMSLVDLEVVAKSGKPKDRKYAAKLQHVSTNAPSVTFLYDDSDSLFDVITERILPVVKNQHLM LCTLLICNAAAMEALPIFLDKLVTALGAVLISVTLLLLFGEILPQAFCSRYGLAIGATVAPFVRVLVWICFPVAYPISKVLDYVLGHEHVALFRRAELKT LVNMHGNEVGWKGGELTHDETTIIAGALELTEKTASDAMTPISDTFAIDINAKLDRDMMNLILEKGHSRVPVYYEQPTNIIGLILAKNLLAIHPEDAAPV KNVTIRRIPRVELQKGHSHMAVVVRKYNKAEQQQQQQQLMPAVSSSTVKEVRVDVDGKASQEKSYRSRSASFHKWKSFANSSNRSLKSSHSKKRVKDEVD SDILKMDGYLPTLPEEEEAIGLITMEDLIEELLQEEIYDETDHHCEE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14520			CBS domain-containing protein ...		Lus10012476 [exp]	0	1
AT2G34540			unknown protein		Lus10028123 [exp]	5.3	0.8577
AT1G73875			DNAse I-like superfamily prote...		Lus10042985 [exp]	9.8	0.8197
AT5G16500			Protein kinase superfamily pro...		Lus10020383 [exp]	17.0	0.8381
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	17.8	0.8553
AT1G75720			Plant protein of unknown funct...		Lus10036971 [exp]	19.7	0.8513
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10007464 [exp]	20.4	0.8445
AT5G41470			Nuclear transport factor 2 (NT...		Lus10032294 [exp]	22.9	0.8490
					Lus10016134 [exp]	31.9	0.8127
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036779 [exp]	32.3	0.8125
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10026213 [exp]	32.7	0.8306

Compare expression of checked genes

Lus10012476 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.