Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14530 557 / 0 TBL13 TRICHOME BIREFRINGENCE-LIKE 13 (.1) AT5G64470 306 / 6e-101 TBL12 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) AT3G62390 176 / 4e-50 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G15900 174 / 4e-50 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT3G28150 169 / 4e-48 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT5G20590 168 / 3e-47 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G12060 169 / 6e-47 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G06230 159 / 7e-45 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT5G15890 162 / 9e-45 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT1G60790 162 / 1e-44 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007108 [exp] 319 / 3e-106 AT5G64470 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) Lus10020489 [exp] 317 / 1e-105 AT5G64470 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) Lus10002430 [exp] 176 / 5e-50 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10034087 [exp] 174 / 9e-50 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10003061 [exp] 173 / 1e-49 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10011932 [exp] 174 / 2e-49 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 171 / 3e-48 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10024167 [exp] 166 / 4e-47 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10034039 [exp] 163 / 2e-45 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G082500 [exp] 618 / 0 AT2G14530 563 / 0.0 TRICHOME BIREFRINGENCE-LIKE 13 (.1) Potri.001G286100 [exp] 306 / 2e-101 AT5G64470 550 / 0.0 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) Potri.004G105500 [exp] 177 / 3e-51 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.002G195800 [exp] 180 / 4e-51 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.004G105600 [exp] 176 / 4e-51 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105700 [exp] 174 / 5e-50 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.002G054400 [exp] 171 / 1e-48 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.006G071500 [exp] 166 / 2e-46 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.013G118500 [exp] 163 / 2e-46 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.010G095700 [exp] 164 / 4e-46 AT1G70230 481 / 2e-169 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10012477 pacid=23145803 polypeptide=Lus10012477 locus=Lus10012477.g ID=Lus10012477.BGIv1.0 annot-version=v1.0 ATGGCCGCCTCCCCAAGAAACCAGACAGCGAAGAAGATCCCTCTCCTTCCTCTATTTTCTGTCGTCTTCTTCGCTTCCATCTTATTCCTCCTCTCTATCC CCCGGAGAGCATCGCTGGCTCCAGAGTCCTACCACTTCGATCCCAGACTCAGATCTGACCTCAACCGATCCTCCGGGTCCTGCAACTACGCTGACGGGTC GTGGGTGTATGACCCGGATCGAAGTCCCGAGAGGTATGACAGTACCTGTAAGGAGATATTCAAAGGTTGGAATTGCATTGCCAGTGGGAAACACAATGCA AGAGACATCCTCAAGTGGCGGTGGCAGCCTAAGGGTTGTAACCTTCCGCCGTTTGATCCTTCGGCCTTCCTGGAAACGTATAGAGACACTAACATAGGGT TCGTGGGCGACTCCTTAAATAGAAACATGTTTGTATCCCTGTTTTGCACTCTCAAACGAGTGTCAAGCGACGTGAAGAAGTGGCGGCCGGCTGGTTCTGA TCGTGGCTTTACATTTGTTCAGTATAACCTTACTATTGCATACCATCGCACCAATCTGTTGGCGAGATACGGTAGGTGGTCAGCTGATCCTAAGGGCGGT GAGCTGGAGTCTCTTGGTTACAAAGAGGGTTATAGGGTTGATGTTGACATCCCAGAAGGCACGTGGGAGAATGCTCCAAGTTTCCATGATATTGTGATTT TCAACACTGGACATTGGTGGTGGGCTCCTTCTAAGTTTGACCCTGTGAAGTCACCCATGCTCTTCTACAGAAAGGGCGTACCAATCATCCCTCCGGTCTC TCCCAATGTTGGCCTGGACATGGTTTTGAAGAATATGATATATTTTGTGGAAGATAAGATGCGTCCTGGCGGGATAAAGTTTTTCCGGACACAATCACCT AGACATTTTGAAGGAGGTGACTGGAATGAGGGCGGTTCTTGCCCACGAAAGCAGCCATTGTTGCCTGACCAAGCAGAACAACTTTTTGGAGTGAGAAACA ACGGTACAAACGTTGAAGCACGGCTGGTGAATCAGCACCTAGTCAAAGTAGTAAAGGGGTCGAGTTTTCGGATTCTGGATATAACTCAGCTGAGTGAATT CAGAGCAGATGGTCATCCAGGCAATGCTGGTGGAAAGAAGCACGATGACTGCATGCACTGGTGCTTACCGGGGGTCACAGATACGTGGAATGATTTGTTC ATTTTGCAGTTACAACAGCATTAG
AA sequence Show only first row Show all	>Lus10012477 pacid=23145803 polypeptide=Lus10012477 locus=Lus10012477.g ID=Lus10012477.BGIv1.0 annot-version=v1.0 MAASPRNQTAKKIPLLPLFSVVFFASILFLLSIPRRASLAPESYHFDPRLRSDLNRSSGSCNYADGSWVYDPDRSPERYDSTCKEIFKGWNCIASGKHNA RDILKWRWQPKGCNLPPFDPSAFLETYRDTNIGFVGDSLNRNMFVSLFCTLKRVSSDVKKWRPAGSDRGFTFVQYNLTIAYHRTNLLARYGRWSADPKGG ELESLGYKEGYRVDVDIPEGTWENAPSFHDIVIFNTGHWWWAPSKFDPVKSPMLFYRKGVPIIPPVSPNVGLDMVLKNMIYFVEDKMRPGGIKFFRTQSP RHFEGGDWNEGGSCPRKQPLLPDQAEQLFGVRNNGTNVEARLVNQHLVKVVKGSSFRILDITQLSEFRADGHPGNAGGKKHDDCMHWCLPGVTDTWNDLF ILQLQQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14530		TBL13	TRICHOME BIREFRINGENCE-LIKE 13...		Lus10012477 [exp]	0	1
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10008038 [exp]	2.0	0.9363
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10038233 [exp]	7.7	0.9384
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10032575 [exp]	16.9	0.9348
AT1G06330			Heavy metal transport/detoxifi...		Lus10020704 [exp]	17.3	0.9130
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032254 [exp]	18.5	0.9332
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10038109 [exp]	19.4	0.8934
AT3G01840			Protein kinase superfamily pro...		Lus10041574 [exp]	19.5	0.9321
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10038665 [exp]	20.4	0.9088
AT1G65900			unknown protein		Lus10007381 [exp]	21.5	0.9246
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10022040 [exp]	23.1	0.9259

Compare expression of checked genes

Lus10012477 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.