Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49720 296 / 1e-101 unknown protein AT5G65810 288 / 1e-98 CGR3 cotton Golgi-related 3, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032796 [exp] 436 / 1e-156 AT3G49720 337 / 7e-118 unknown protein Lus10019279 [exp] 302 / 7e-104 AT3G49720 421 / 7e-151 unknown protein Lus10011564 [exp] 299 / 2e-102 AT3G49720 422 / 4e-151 unknown protein Lus10007228 [exp] 288 / 5e-98 AT3G49720 401 / 6e-143 unknown protein Lus10039648 [exp] 286 / 2e-97 AT3G49720 405 / 2e-144 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114000 [exp] 317 / 2e-109 AT5G65810 364 / 2e-128 cotton Golgi-related 3, unknown protein Potri.009G082400 [exp] 300 / 9e-103 AT3G49720 393 / 7e-140 unknown protein Potri.001G288200 [exp] 298 / 4e-102 AT3G49720 342 / 1e-119 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012481 pacid=23149339 polypeptide=Lus10012481 locus=Lus10012481.g ID=Lus10012481.BGIv1.0 annot-version=v1.0 ATGTCGAGGAGACCGATAAATCCCTCCCGCCGGTACGGTGATAGCGGCGGAGGTGCTCTCTTCAGTTCCAAGTCCCGTTCTCCTCCTTACCTGCCTATTG CTCTCATCATCCTTGGAGGATTGGCTGTGTTCGCTTATCTTCATGGCGGATCAGGAGGATTTGGTGGCAAGAAATGGGCTTCTATGCGGCTCCAAGGTGA TAGTAGTTCATGCACAGGAGAGATCTACCGGGCGCTTCCGGTGTTACGCAAGGCGTATGGTGACAGCATGCATAAAGTAATGCATGTCGGCCCTGATACT TGTTCAGTGGTTTTTAGTTTGCTAAAAGAAGAGGAAACTGAGGCCTGGGGTGTAGAGCCTTATGATCTGGAGGATGCTGATGCCAACTGTCGGGCACTTG TACGGAAAGGCTTTGTACGTGTTGCTGATATCAAGTACCCACTTCCTTACAGACCCAAATCGTTTTCCCTTGTCATTGTGTCGGAAGCACTGGATTATCT CTCTCCAAAATACCTCAACAAGACAATTCCAGATTTGGCTAGGGTCTCAACTGAGGGCATCATAGTGTTTACAGGTTTTCCTGGACAGCGCACAACTAAA GCTGCAGATGTGTCTAAGTTTGGTAGGGCGGCTAAAATGAGGAGTGCCTCTTGGTGGAAGCGATACTTTGGTCTAACAAATGTAGAAATAAATGAGGCAG CAACCAAAAAGTTCGAGGAAGCTGCAACAAGAATGTCCTACAGCCCAAGGTGCCAAATTTTCCACCTCAAGGCATACAGTTGA
AA sequence Show only first row Show all	>Lus10012481 pacid=23149339 polypeptide=Lus10012481 locus=Lus10012481.g ID=Lus10012481.BGIv1.0 annot-version=v1.0 MSRRPINPSRRYGDSGGGALFSSKSRSPPYLPIALIILGGLAVFAYLHGGSGGFGGKKWASMRLQGDSSSCTGEIYRALPVLRKAYGDSMHKVMHVGPDT CSVVFSLLKEEETEAWGVEPYDLEDADANCRALVRKGFVRVADIKYPLPYRPKSFSLVIVSEALDYLSPKYLNKTIPDLARVSTEGIIVFTGFPGQRTTK AADVSKFGRAAKMRSASWWKRYFGLTNVEINEAATKKFEEAATRMSYSPRCQIFHLKAYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49720			unknown protein		Lus10012481 [exp]	0	1
					Lus10003536 [exp]	3.0	1.0000
					Lus10011425 [exp]	4.2	1.0000
					Lus10011832 [exp]	4.2	1.0000
					Lus10022518 [exp]	4.9	1.0000
					Lus10027689 [exp]	5.9	1.0000
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10017080 [exp]	7.5	1.0000
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10031524 [exp]	7.7	1.0000
					Lus10003082 [exp]	10.5	1.0000
					Lus10009727 [exp]	11.5	1.0000
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10011951 [exp]	13.5	1.0000

Compare expression of checked genes

Lus10012481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.