Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G07990 161 / 6e-51 Chaperone DnaJ-domain superfamily protein (.1.2) AT5G01390 54 / 4e-09 DNAJ heat shock family protein (.1.2.3.4) AT4G28480 53 / 9e-09 DNAJ heat shock family protein (.1.2) AT2G20560 53 / 1e-08 DNAJ heat shock family protein (.1) AT3G08910 51 / 4e-08 DNAJ heat shock family protein (.1) AT5G03160 50 / 1e-07 ATP58IPK homolog of mamallian P58IPK (.1) AT3G17830 49 / 2e-07 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 49 / 3e-07 DNAJ heat shock family protein (.1) AT4G39960 47 / 9e-07 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G25530 47 / 1e-06 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032795 [exp] 263 / 1e-90 AT4G07990 261 / 2e-88 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10017687 [exp] 51 / 4e-08 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10026498 [exp] 51 / 5e-08 AT5G03160 576 / 0.0 homolog of mamallian P58IPK (.1) Lus10021961 [exp] 50 / 9e-08 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10041254 [exp] 50 / 9e-08 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10015078 [exp] 50 / 1e-07 AT5G03160 638 / 0.0 homolog of mamallian P58IPK (.1) Lus10005033 [exp] 50 / 1e-07 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 50 / 1e-07 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10023181 [exp] 50 / 1e-07 AT5G03160 507 / 2e-178 homolog of mamallian P58IPK (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G146600 [exp] 207 / 2e-68 AT4G07990 235 / 3e-78 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G114600 [exp] 206 / 2e-68 AT4G07990 216 / 3e-71 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.007G136700 [exp] 51 / 4e-08 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.016G088600 [exp] 51 / 6e-08 AT5G03160 570 / 0.0 homolog of mamallian P58IPK (.1) Potri.017G016100 [exp] 50 / 7e-08 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 50 / 1e-07 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.010G122300 [exp] 49 / 3e-07 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.018G034600 [exp] 48 / 4e-07 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.008G123200 [exp] 47 / 7e-07 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.010G036200 [exp] 47 / 1e-06 AT1G24120 566 / 0.0 ARG1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10012482 pacid=23149330 polypeptide=Lus10012482 locus=Lus10012482.g ID=Lus10012482.BGIv1.0 annot-version=v1.0 ATGCAAGAAGAGTATGAAGAAGAGATGGAGAGAGTAGAGCGGATTAGGCGTATGCAAAGTGTGTTTAATCGTGAAAGAAATAAATATAAAAGAAGCTATG AGAGCTGGAAGGAAAATGGTCAAGGAGCATATCATCAACATTTTCAACGTGATGATTGGTACTGGAAGGTTGATACATCCTTCAGAGATCATAGCAACAA CTTTAGGAGACCTCCGAGAGACAATATACCTCCTCTGATGTCTCATCATTACATAGTTCTGGGACTTGACAGGTCAAGAACGACAGCGTACACAGATGCT GAGATCAAGACGGCATTCAGGAAAAAGGCAAAGGAGTTCCATCCAGATCAAAACCAAAACAATAAAGAGGCTGCTGAGGCAAAGTTCAAACAGGTAATGA CTTCCTATGAGGCTATTAAGAAAGAAAGGAAGAGCATGAGATGA
AA sequence Show only first row Show all	>Lus10012482 pacid=23149330 polypeptide=Lus10012482 locus=Lus10012482.g ID=Lus10012482.BGIv1.0 annot-version=v1.0 MQEEYEEEMERVERIRRMQSVFNRERNKYKRSYESWKENGQGAYHQHFQRDDWYWKVDTSFRDHSNNFRRPPRDNIPPLMSHHYIVLGLDRSRTTAYTDA EIKTAFRKKAKEFHPDQNQNNKEAAEAKFKQVMTSYEAIKKERKSMR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012482 [exp]	0	1
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012483 [exp]	1.0	0.8976
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10019188 [exp]	3.5	0.8795
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011012 [exp]	3.7	0.8424
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10025203 [exp]	4.5	0.8605
AT3G16190			Isochorismatase family protein...		Lus10037581 [exp]	5.3	0.8537
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10026046 [exp]	6.0	0.8699
AT4G01995			unknown protein		Lus10012004 [exp]	8.5	0.8343
AT1G13750			Purple acid phosphatases super...		Lus10036902 [exp]	8.9	0.8681
AT1G74410			RING/U-box superfamily protein...		Lus10021628 [exp]	10.4	0.8571
AT3G27100			unknown protein		Lus10012534 [exp]	10.7	0.8338

Compare expression of checked genes

Lus10012482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.