Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10120 202 / 5e-62 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 175 / 2e-50 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G26260 164 / 2e-47 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT3G07340 157 / 5e-44 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 154 / 5e-44 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT3G23690 154 / 2e-43 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 155 / 6e-43 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G50915 148 / 4e-42 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G18300 147 / 5e-41 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G36540 143 / 5e-40 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006491 [exp] 603 / 0 AT1G10120 213 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029110 [exp] 178 / 2e-51 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013052 [exp] 172 / 3e-49 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030581 [exp] 170 / 9e-47 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 170 / 1e-46 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10023562 [exp] 152 / 2e-43 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10040448 [exp] 152 / 2e-43 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10003172 [exp] 145 / 1e-40 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030807 [exp] 144 / 1e-40 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114700 [exp] 345 / 3e-117 AT1G10120 274 / 3e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G146500 [exp] 338 / 3e-114 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G113200 [exp] 172 / 1e-48 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.010G136100 [exp] 171 / 4e-48 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G248500 [exp] 170 / 5e-48 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G235400 [exp] 169 / 1e-47 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 164 / 9e-46 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G104900 [exp] 154 / 1e-43 AT5G50915 177 / 3e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G117300 [exp] 152 / 3e-42 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.004G156000 [exp] 152 / 3e-42 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10012484 pacid=23149334 polypeptide=Lus10012484 locus=Lus10012484.g ID=Lus10012484.BGIv1.0 annot-version=v1.0 ATGGGTGGTGGTGGTGGTGATCTGAGTTATCAACATGATATGGAGTCCCAAAATAGAGCTATGAATTGCTCACCATCAGAAATGGCAGCAAATCCCTTCT TTGCTTCTGCTTGGGATCCAGTTGTTTCACTTGGGCAGCATGAGAGCTTTGGTGGTTCATCCATGGTGTGTCAAAATGAATTTGCCCATCATCAGTCTTT CCCAATGGCACTGGACAGCCAAGCAGGTAGAGACAACTCTCATCTTGTTCACTACCCGTTTGATTCAGGCTTTGTCGAGCTGGTGGGAAATGGGAATTTC TCAGAGATGGTTGGCCCTTTTGGGCTTAATGAATGTGGGCAGATTCCCAATCCGGGTTTCCATCCGAATTTCGGATCACAGACCGATCAAGAGGATCACC CAATGTCTGAAGGTGGAGTAGGAGCTTCACCTGATGTAAACAGGAGGAAAAGGGTTGCGGGCTCTACTTCTCCTTTTGACTCCAATAAGAAGAATGCTAA AGAGGAGCTGGATAAGGATCAATCAAGAGATAATTGTGATGCTCTGAAAGAAGGATATGATAAGAAACCTAGACCGAGAAGAATGGCTGGTTCTAATTCA CAGGCAGCTAAACAAGCTAAAGAAGATTCTAATAACAGTGGAGAAACTGCTAAAGATAATTACATTCATATCAGAGCAAGAAGGGGTCAGGCTACAAATA GTCACAGCCTTGCAGAAAGGGTGAGAAGAGAAAAGATCAGTGAAAGGATGAGACTGCTACAAGAACTGGTACCAGGATGCAATAAGATTACTGGAAAGGC AGTTATGCTTGATGAGATTATCAATTATGTCCAGTCGTTACAACAGCAGGTTGAGTTCTTGTCTATGAAACTTGCAACTGTCAATCCAGATGTGAGCATC GATATCGAGAGGATTCTTTCCAAAGACGTGAGCGAGCCAAGCCCAACACATGCAGTGCATACTATTTATTTCTTGCCTGAGGATTGTTGGAGTAATGAAA TATTCTTTCATCTTATTTTATGCAGCAGCTGCTTCACCCACACAGTAATAACTTATTGA
AA sequence Show only first row Show all	>Lus10012484 pacid=23149334 polypeptide=Lus10012484 locus=Lus10012484.g ID=Lus10012484.BGIv1.0 annot-version=v1.0 MGGGGGDLSYQHDMESQNRAMNCSPSEMAANPFFASAWDPVVSLGQHESFGGSSMVCQNEFAHHQSFPMALDSQAGRDNSHLVHYPFDSGFVELVGNGNF SEMVGPFGLNECGQIPNPGFHPNFGSQTDQEDHPMSEGGVGASPDVNRRKRVAGSTSPFDSNKKNAKEELDKDQSRDNCDALKEGYDKKPRPRRMAGSNS QAAKQAKEDSNNSGETAKDNYIHIRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDVSI DIERILSKDVSEPSPTHAVHTIYFLPEDCWSNEIFFHLILCSSCFTHTVITY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10012484 [exp]	0	1
AT5G48970			Mitochondrial substrate carrie...		Lus10006521 [exp]	1.0	0.8684
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10011301 [exp]	3.7	0.8477
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10004434 [exp]	5.7	0.7990
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10024754 [exp]	8.2	0.7409
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10041820 [exp]	14.0	0.7757
AT5G28850			Calcium-binding EF-hand family...		Lus10011811 [exp]	14.7	0.8044
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10020930 [exp]	16.2	0.7755
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032668 [exp]	16.4	0.7604
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10014317 [exp]	19.8	0.7522
AT1G53710			Calcineurin-like metallo-phosp...		Lus10036645 [exp]	19.9	0.7667

Compare expression of checked genes

Lus10012484 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.