Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59520 421 / 2e-146 CW7 CW7 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003786 [exp] 666 / 0 AT1G59520 463 / 9e-159 CW7 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G013500 [exp] 472 / 1e-166 AT1G59520 505 / 7e-180 CW7 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09741 [flax] [poplar] DUF2045 Uncharacterized conserved protein (DUF2045)
Representative CDS sequence Show only first row Show all	>Lus10012485 pacid=23149343 polypeptide=Lus10012485 locus=Lus10012485.g ID=Lus10012485.BGIv1.0 annot-version=v1.0 ATGGTGAAGAAGCACTCGGCATTACTAGGGCGTGAGGAGGAGCAAGATCCTTCTGACGCTCACATGGATATTCGATTTTGGCGTGATATGTTTGATATGT ACTTTGTCCGTGGTAAAGAGACGAGGGGAAGCCAAGAAGATGATCTCATATTCTTTGTTAAGAAAAAGATCACACAGAAACACGGTGCCAATGATGATGA CGAGGACCCTCCATACTTTGTACGCAGGTGGGCACCTAAGTTGGATGATTTAATAACTGAGGATTCAGCAGAGGTTGACTGGGGCCGCTCATTTTACCTG AATATGATAGCACACACGTCATACTCAGTAACTGTGGCTATTTGCAGTTATAATGTTCTTCAGAATCATCAAGCTGGCCAAAACATGCCATTGTCTCCCA TATACAAGGTTGTAAAGACTGTCTATGCATCTCCTAGTCGTGTAAATTTTCAACTGGACTCTAAAAAGGAAGTGGAGACATTGCCAGCTTATCCAGAAAT CTGTTTTGCAGTTGACGATTTTGACTCCACTATTGATGCTGTGGTTCTGACTGAAAGAGACCATTGCTATTGTGTGCTTCTTAATGCACATGATGGGGCA GCATTTCCTACTGAAGATGAGTCACATGATAGCAGTTCTAGTAGCTCTTGTCAGAGAAGTGATAAAAATTCTGCAAATATAAAGGCATCAAAGCTCACTC TTTTCTCTGGCTTCGTAAGCTATCAAATGGTTCGACAAGCTTATGAGGCTGGTAAGTCGGGATTTGGAAGCCTACTTTCTCTTGGTCAATCTCCCCGCAA ACCAGACAAGCTTTTCATGAAAGGCCCTGGCGGTCGTGGGGAAGTGGAGGTTGCTGTTTCTGGTGTTGCAGATCAAAGCCAGTCTGGGGATAGTGGTCCA TTCTCACCACTAGCGTCGAAAAAAGGGTTCGGAATTGGGTCAATTGTTAAAAAGGCAGCATCAGTTGCATCTGAAGCCGCAAAAAATGCATATGCTGCAG CTTCAACATCCTCAGACGATGAAATGTTGCCCCTGAAATGCTGCTTGATGTCTATTTCGTTACCTTGGGAAGACATTGCTTGTGATCTTTTATTCAAGGA ACTGAACTATTCATGCTTGCCGAAATGGCTGTCACCGGAAGATGGTCGGAAAGTCACCAGTCAGTCGCTAGACTGGGTTGGGACGAGGTGA
AA sequence Show only first row Show all	>Lus10012485 pacid=23149343 polypeptide=Lus10012485 locus=Lus10012485.g ID=Lus10012485.BGIv1.0 annot-version=v1.0 MVKKHSALLGREEEQDPSDAHMDIRFWRDMFDMYFVRGKETRGSQEDDLIFFVKKKITQKHGANDDDEDPPYFVRRWAPKLDDLITEDSAEVDWGRSFYL NMIAHTSYSVTVAICSYNVLQNHQAGQNMPLSPIYKVVKTVYASPSRVNFQLDSKKEVETLPAYPEICFAVDDFDSTIDAVVLTERDHCYCVLLNAHDGA AFPTEDESHDSSSSSSCQRSDKNSANIKASKLTLFSGFVSYQMVRQAYEAGKSGFGSLLSLGQSPRKPDKLFMKGPGGRGEVEVAVSGVADQSQSGDSGP FSPLASKKGFGIGSIVKKAASVASEAAKNAYAAASTSSDDEMLPLKCCLMSISLPWEDIACDLLFKELNYSCLPKWLSPEDGRKVTSQSLDWVGTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59520		CW7	CW7 (.1.2.3)		Lus10012485 [exp]	0	1
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	4.2	0.8856
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10015388 [exp]	5.7	0.8967
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	7.5	0.8708
AT1G15030			Protein of unknown function (D...		Lus10033747 [exp]	8.9	0.8702
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	11.0	0.8753
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10040360 [exp]	13.5	0.8510
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10039583 [exp]	14.1	0.8581
AT1G78790			unknown protein		Lus10042782 [exp]	14.7	0.8458
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Lus10042533 [exp]	15.2	0.8481
AT1G50510			indigoidine synthase A family ...		Lus10022419 [exp]	15.5	0.8519

Compare expression of checked genes

Lus10012485 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.