Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10150 387 / 1e-132 ATPP2-A10 Carbohydrate-binding protein (.1) AT1G59510 349 / 2e-118 CF9 Carbohydrate-binding protein (.1) AT3G49790 263 / 4e-85 Carbohydrate-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003785 [exp] 659 / 0 AT1G10150 447 / 1e-156 Carbohydrate-binding protein (.1) Lus10007727 [exp] 495 / 6e-176 AT1G10150 429 / 1e-149 Carbohydrate-binding protein (.1) Lus10018663 [exp] 361 / 5e-124 AT1G10150 342 / 2e-116 Carbohydrate-binding protein (.1) Lus10039651 [exp] 261 / 4e-84 AT1G10150 298 / 2e-98 Carbohydrate-binding protein (.1) Lus10011718 [exp] 261 / 5e-84 AT1G10150 288 / 2e-94 Carbohydrate-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G116400 [exp] 447 / 1e-156 AT1G10150 387 / 1e-132 Carbohydrate-binding protein (.1) Potri.014G014100 [exp] 429 / 2e-149 AT1G10150 401 / 3e-138 Carbohydrate-binding protein (.1) Potri.007G006600 [exp] 360 / 5e-122 AT1G10150 355 / 8e-120 Carbohydrate-binding protein (.1) Potri.014G006800 [exp] 332 / 3e-111 AT1G10150 350 / 5e-118 Carbohydrate-binding protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012487 pacid=23149338 polypeptide=Lus10012487 locus=Lus10012487.g ID=Lus10012487.BGIv1.0 annot-version=v1.0 ATGGATCTAGAACTGGTGAAGGAGCAAGGTTTGGGATTATATAGGAGGAGGAAGAAATGGCTGCTTCTGTTAGGTGTGATTGGGGTATCTGGTTATGGTG CTTGCAAGGTTTGTAATCTGCCTTCCGTGACGAGGAAGCGGCGGAGGTTGATGAAGCTAGCCGGAGCTTTGGTTTCCGTCGCTGAGATGTTGTCTGATTC TGCAGAGACGATAGGCATCGTGTCTAGAGATTTGAAGGAGTTTCTGCAGTCAGATTCAGATGAAATCCCGAATAGTTTGAAGCAAATATCGAAACTCACT AAATCGGACGAGTTCTCCGTGTCATTGACTCGGGTTTGTCAGGCCATGACGGTTGGTATTCTGCGTGGGTATGAAGACTGTGTGTCGCGGAAGGAGAATC AATTGGCCGCAGGAGCTATGGATTCCAGTTTGAAGGATAAATTCTCTGAGAAACTATTCTCTGAAGCGGGGACTGGATTTGTATCCGTTGTGGTTGGAAG CTTCGCCAGAAATTTGGTTTTGGGGTTCTACTCTGCTGACAAAGATGGTGAGGAGGATAAGGAAATGAAGGAAAGTTCATCAACTGATGTACCTAGATGG ATTAGTGTTGTTTGTAATGGGCAGGGTAAGGAGCTTATAGCTGATTGCGTACAACAGTTTGTAAGCACTGCAGTGGCAGTTTTCCTTGATAATACAATCC ACCTCAATACTTACGATCAATTCTTTGCCGGCCTTACCAATCCAAATCACCGAAACGATGTGAGAGACATGCTGGTGGAGGTCTGCAATGGGTCTGTAGA AACGCTGGTAAAAACATCTCACCATGTATTGACAAGGTCAAGCTCGAATCTGAGTGAAGCAGATGAGCCGGTCAAGTGGGAGAAAAGAAGCTCGCAGAGT GGTGGGTGGGTTAAACAGGTTTCATCGACATTGGCAGTGCCAAGTAACAGAAAGTTGGTGCTAGACGTGACAGGGAGGGTAACGTTTGAAACGGTGAGAT CCATAGTGGCATTGCTGTTGTGGAAGATGTCGGATGGTTTGAAAACAAGTGTTAATGTAGTTCATGATGGAGTAGTGGAGAGGGGGCTTCAAGTTGTGAG GTATGTTGGTGCCAAGTCTTCAGTCATTGTTACCATTTGCCTGGCCTTGTATTTACACATAGTGTGCAGCACCAGGGTCATCATGATTGCTTAA
AA sequence Show only first row Show all	>Lus10012487 pacid=23149338 polypeptide=Lus10012487 locus=Lus10012487.g ID=Lus10012487.BGIv1.0 annot-version=v1.0 MDLELVKEQGLGLYRRRKKWLLLLGVIGVSGYGACKVCNLPSVTRKRRRLMKLAGALVSVAEMLSDSAETIGIVSRDLKEFLQSDSDEIPNSLKQISKLT KSDEFSVSLTRVCQAMTVGILRGYEDCVSRKENQLAAGAMDSSLKDKFSEKLFSEAGTGFVSVVVGSFARNLVLGFYSADKDGEEDKEMKESSSTDVPRW ISVVCNGQGKELIADCVQQFVSTAVAVFLDNTIHLNTYDQFFAGLTNPNHRNDVRDMLVEVCNGSVETLVKTSHHVLTRSSSNLSEADEPVKWEKRSSQS GGWVKQVSSTLAVPSNRKLVLDVTGRVTFETVRSIVALLLWKMSDGLKTSVNVVHDGVVERGLQVVRYVGAKSSVIVTICLALYLHIVCSTRVIMIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	0	1
AT1G02290			unknown protein		Lus10028606 [exp]	1.4	0.8588
AT1G02290			unknown protein		Lus10018907 [exp]	2.4	0.8379
AT5G06810			Mitochondrial transcription te...		Lus10012021 [exp]	3.2	0.8064
AT2G20495			unknown protein		Lus10022916 [exp]	3.5	0.8042
AT3G57990			unknown protein		Lus10004184 [exp]	3.6	0.7744
AT1G03560			Pentatricopeptide repeat (PPR-...		Lus10039799 [exp]	4.0	0.7883
AT3G23580		RNR2A	ribonucleotide reductase 2A (....		Lus10004435 [exp]	4.5	0.8194
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	5.9	0.7938
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	7.9	0.8256
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000950 [exp]	8.4	0.7501

Compare expression of checked genes

Lus10012487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.