Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02790 295 / 2e-96 PGA4 polygalacturonase 4 (.1) AT4G18180 248 / 4e-78 Pectin lyase-like superfamily protein (.1) AT2G43890 241 / 1e-75 Pectin lyase-like superfamily protein (.1) AT2G43870 241 / 1e-75 Pectin lyase-like superfamily protein (.1) AT3G59850 236 / 1e-73 Pectin lyase-like superfamily protein (.1) AT1G05660 236 / 2e-73 Pectin lyase-like superfamily protein (.1) AT1G05650 233 / 1e-72 Pectin lyase-like superfamily protein (.1) AT3G07820 233 / 2e-72 Pectin lyase-like superfamily protein (.1) AT4G35670 230 / 2e-71 Pectin lyase-like superfamily protein (.1) AT2G43860 228 / 2e-70 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003782 [exp] 755 / 0 AT1G02790 323 / 4e-107 polygalacturonase 4 (.1) Lus10041059 [exp] 241 / 4e-75 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 241 / 5e-75 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10005304 [exp] 239 / 1e-74 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 236 / 2e-73 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 234 / 1e-72 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 232 / 5e-72 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10011419 [exp] 231 / 1e-71 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 230 / 1e-71 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202100 [exp] 335 / 5e-112 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1) Potri.002G202200 [exp] 334 / 1e-111 AT1G02790 400 / 7e-138 polygalacturonase 4 (.1) Potri.010G011200 [exp] 302 / 4e-99 AT1G02790 300 / 1e-98 polygalacturonase 4 (.1) Potri.010G007300 [exp] 285 / 3e-92 AT4G18180 289 / 2e-94 Pectin lyase-like superfamily protein (.1) Potri.010G011100 [exp] 282 / 2e-91 AT1G02790 295 / 1e-96 polygalacturonase 4 (.1) Potri.009G169100 [exp] 260 / 2e-82 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006700 [exp] 251 / 1e-79 AT2G43890 591 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G145300 [exp] 249 / 5e-79 AT2G43890 566 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 244 / 5e-77 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.017G006400 [exp] 238 / 1e-74 AT1G05660 472 / 1e-166 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10012489 pacid=23149342 polypeptide=Lus10012489 locus=Lus10012489.g ID=Lus10012489.BGIv1.0 annot-version=v1.0 ATGGCTTTTGAAACAAAAATATTGAGTAGGAGAGTCCTTATTTTTATTTCTCTTCTAGCTTTCTTATCATCTTTCACATACGGCTCTTTAAAAGAAATAA ATATCCCCCATCGTGGTCTTCACGTTGTCGACCCGCCACCTAATATGGAGGTGTCACGCAAGATTGTCGATGTCATGCATTTTGGAGCCAAAGCGAATGG AAAAGATGATGATGTGATGACATTTATGCAAGCGTGGCAACAGGCATGTAAAAAATGCCCAGATCCAACAAAACTTCTAATTCCAGAAGGCATATATTTA TCATCCCCCGTGATTTTCCAAGGACCCTGTGTAAGCCAAGTACCCATACTCGTTGAAGTGAGAGGAAACATAATCGCTTCAGGTGACTTGAGCACTTACT CTGAAGATTATTGGTTTATGTTTAATAAAATCAATGGCTTGATTCTCAATGGTGGAGGAACATTTGACGGTAGAGGTCCTCAAGTTTGGGCAACAGTAAA AAAGGGCTCAAAGGGAAATCGCCCATCTTCTATTGTGATCCGAAGCGTGGACAATGTAGTGGTGCACGACATAATCTCCGTGGACAGCAAGTTCTTCCAT TATCACGTGTCTAGATGTGACAACTTCACTGCTTTCAACCTACGCATGACTGCACCGGATGACAGTCCCAATACTGATGGCATTCATATTAGTAGCAGCA ATGGTGTCCATATATCCAACAGTATCATTGCAACTGGAGACGACTGCATATCAGTTGGCCATGGTGTTAACAATGCTAACATATTTGGCATCACATGTGG ACCTGGACATGGCATTAGCATTGGCAGTCTGGGAAAGAGAGAGGGAGAAACAGACGTTTGTGGAATTACAGTGACCAATTGTACATTAATTAAAACGGAC AATGGCGTGAGAATAAAAACATTTGCCTCGAAGATTCCACTCAAAGCTTCTATGATTACTTTCCAAGACATTATTATGCACGAAGTTGAGAATCCTATTA TCATTGACCAAAATTATGGCTCCAAGAATAAAAATGGGGCATCTAATGTTAAGGTGAGTTCAGTGAAATACAAGAACATTCGAGGAACGACAGTTTCAAA TGAAGGAGTCGTCTTGGATTGTAGCACAGTATCAGGTTGTGATGGAATTGAATTTGTTGATGTCTGTCTAGACTTCGTCACCAATCCCGCTATCCAATCA GAAAAGGCCCTCGCTGCGGGTTTTACTGCAATTTTTATCTTAACAAACAAACCATTCCGTTACTTTGAAGGTTATTGTTATACCTCGAACCTATCGATGT AA
AA sequence Show only first row Show all	>Lus10012489 pacid=23149342 polypeptide=Lus10012489 locus=Lus10012489.g ID=Lus10012489.BGIv1.0 annot-version=v1.0 MAFETKILSRRVLIFISLLAFLSSFTYGSLKEINIPHRGLHVVDPPPNMEVSRKIVDVMHFGAKANGKDDDVMTFMQAWQQACKKCPDPTKLLIPEGIYL SSPVIFQGPCVSQVPILVEVRGNIIASGDLSTYSEDYWFMFNKINGLILNGGGTFDGRGPQVWATVKKGSKGNRPSSIVIRSVDNVVVHDIISVDSKFFH YHVSRCDNFTAFNLRMTAPDDSPNTDGIHISSSNGVHISNSIIATGDDCISVGHGVNNANIFGITCGPGHGISIGSLGKREGETDVCGITVTNCTLIKTD NGVRIKTFASKIPLKASMITFQDIIMHEVENPIIIDQNYGSKNKNGASNVKVSSVKYKNIRGTTVSNEGVVLDCSTVSGCDGIEFVDVCLDFVTNPAIQS EKALAAGFTAIFILTNKPFRYFEGYCYTSNLSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02790		PGA4	polygalacturonase 4 (.1)		Lus10012489 [exp]	0	1
AT3G24130			Pectin lyase-like superfamily ...		Lus10016678 [exp]	9.8	0.9949
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10023732 [exp]	15.2	0.9942
					Lus10010593 [exp]	19.4	0.9921
					Lus10039439 [exp]	22.7	0.9919
AT2G15580			RING/U-box superfamily protein...		Lus10030120 [exp]	23.2	0.9555
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10036850 [exp]	25.0	0.9918
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10004556 [exp]	27.6	0.9917
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	30.3	0.9916
AT5G14010	C2H2ZnF	KNUCKLES, KNU	KNUCKLES, C2H2 and C2HC zinc f...		Lus10011884 [exp]	30.8	0.9192
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Lus10019187 [exp]	32.5	0.9916

Compare expression of checked genes

Lus10012489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.