Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49810 154 / 7e-44 ARM repeat superfamily protein (.1) AT5G65920 154 / 7e-44 ARM repeat superfamily protein (.1) AT3G18710 93 / 3e-21 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT5G64660 92 / 7e-21 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT5G42340 89 / 9e-20 PUB15 Plant U-Box 15 (.1) AT2G35930 88 / 2e-19 PUB23 plant U-box 23 (.1) AT3G19380 87 / 3e-19 PUB25 plant U-box 25 (.1) AT3G54850 87 / 4e-19 ATPUB14 plant U-box 14 (.1) AT1G23030 86 / 1e-18 PUB11 ARM repeat superfamily protein (.1) AT3G46510 86 / 1e-18 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010598 [exp] 183 / 6e-55 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10005500 [exp] 165 / 1e-51 AT5G65920 135 / 3e-39 ARM repeat superfamily protein (.1) Lus10027047 [exp] 131 / 1e-34 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10025371 [exp] 126 / 3e-34 ND / Lus10012639 [exp] 121 / 8e-33 ND / Lus10011950 [exp] 114 / 6e-30 ND 40 / 0.001 Lus10011962 [exp] 108 / 6e-28 ND / Lus10042635 [exp] 106 / 8e-27 AT3G53010 78 / 2e-16 Domain of unknown function (DUF303) (.1) Lus10003840 [exp] 101 / 1e-25 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G014300 [exp] 170 / 1e-49 AT3G49810 553 / 0.0 ARM repeat superfamily protein (.1) Potri.002G116600 [exp] 167 / 9e-49 AT3G49810 546 / 0.0 ARM repeat superfamily protein (.1) Potri.006G277700 [exp] 164 / 3e-47 AT3G49810 498 / 3e-175 ARM repeat superfamily protein (.1) Potri.002G116500 [exp] 163 / 4e-47 AT3G49810 556 / 0.0 ARM repeat superfamily protein (.1) Potri.005G063700 [exp] 102 / 1e-24 AT1G49780 139 / 3e-37 plant U-box 26 (.1) Potri.007G105300 [exp] 100 / 6e-24 AT1G49780 157 / 8e-44 plant U-box 26 (.1) Potri.001G216100 [exp] 93 / 2e-21 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.009G016200 [exp] 93 / 2e-21 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.007G110600 [exp] 90 / 4e-20 AT5G09800 398 / 6e-137 ARM repeat superfamily protein (.1) Potri.002G070500 [exp] 89 / 6e-20 AT3G18710 288 / 6e-94 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10012491 pacid=23149332 polypeptide=Lus10012491 locus=Lus10012491.g ID=Lus10012491.BGIv1.0 annot-version=v1.0 ATGGCCATGAATCGACGGAGAAAAGACGCAACCCTTTTGGGTCTGGATGTTGGTGGGCAAGTCTTAGATCTCGAAACTGCTGTAAAAGACGGCATTCTGG GCGGCGGCGGTGGTGAAAGTGGAGGAGGGTTCATTAGTTGCGCGTCGTCGGAGAAATTAGATCTGAAGAAAATGGTTGAAGAGCTTGAATCCGTTCAAGT GCCTTCCGTATTCATCTGCCCAATCTCGCTGGAACCCATGCGAGACCCAGTGACCCTCTGCACTGGACAGACATACGAGAGATCCAACATCCTGAAATGG TTCTCAATGGGACACTACACTTGCCCCACCACCATGCAAGAGCTATGGGACCATGACCTCACTCCCAACGCCACTCTCCAGCACCTCATCCACACCTGGT TCTCCCAGAATATTGATCCGGTTGAAGAAGAAACATATGGAATCCATAAAATTAGAGGTAATGGAAAGCAAGCAGCCACTTTAGACCGGCTGCAAGAGCG ACAGACCACCGCTTCGAAGCGGAAAGATGCAGATGTCCCGAAGAAGAACAAGAAGACAAAAATCTACGGCTCCCTTGACCGATACCCTCCGGTTAGGACA TTTCCTCCAGATGATGACAAGGATGAGGTCAAGGCTTCTCCGCACATGGCTTCTATGCACTTATCTTCTCTGCACTTGTCTTCTCCACACTTAGCTTCTC CGCACTTGGCTTCTCCACACTTGGCTTCTATAGGCTCGTCTCATACCTCCGCGAGTGCTGGGGTTAGAGGAGGGAAACCTAGCCGACTTGCGCAGGTACG CGAGGAGGATGTCACCACAAGACTGGATGACGAGGGAGTCAGTCTTACTTGGTAG
AA sequence Show only first row Show all	>Lus10012491 pacid=23149332 polypeptide=Lus10012491 locus=Lus10012491.g ID=Lus10012491.BGIv1.0 annot-version=v1.0 MAMNRRRKDATLLGLDVGGQVLDLETAVKDGILGGGGGESGGGFISCASSEKLDLKKMVEELESVQVPSVFICPISLEPMRDPVTLCTGQTYERSNILKW FSMGHYTCPTTMQELWDHDLTPNATLQHLIHTWFSQNIDPVEEETYGIHKIRGNGKQAATLDRLQERQTTASKRKDADVPKKNKKTKIYGSLDRYPPVRT FPPDDDKDEVKASPHMASMHLSSLHLSSPHLASPHLASPHLASIGSSHTSASAGVRGGKPSRLAQVREEDVTTRLDDEGVSLTW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65920			ARM repeat superfamily protein...		Lus10012491 [exp]	0	1
AT5G02440			unknown protein		Lus10023770 [exp]	7.2	0.7788
AT1G21090			Cupredoxin superfamily protein...		Lus10028576 [exp]	9.6	0.8004
AT3G11640			unknown protein		Lus10016965 [exp]	10.9	0.7827
AT3G06950			Pseudouridine synthase family ...		Lus10039480 [exp]	12.7	0.7640
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10013344 [exp]	20.5	0.7488
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	32.6	0.7499
AT2G37560		ATORC2	origin recognition complex sec...		Lus10024412 [exp]	34.8	0.7598
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	36.3	0.7747
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10039460 [exp]	36.5	0.7439
AT1G62050			Ankyrin repeat family protein ...		Lus10002942 [exp]	38.3	0.7547

Compare expression of checked genes

Lus10012491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.