Plant FIBer expression Database

Lus10012493 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G23540 219 / 3e-73 Mov34/MPN/PAD-1 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021746
[exp]
226 / 2e-75 AT5G23540 618 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
Lus10042663
[exp]
225 / 8e-75 AT5G23540 616 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
Lus10031085
[exp]
214 / 2e-70 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
Lus10035470
[exp]
214 / 2e-70 AT5G23540 601 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G127900
[exp]
218 / 4e-72 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
Potri.014G032900
[exp]
217 / 1e-71 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10012493 pacid=23149335 polypeptide=Lus10012493 locus=Lus10012493.g ID=Lus10012493.BGIv1.0 annot-version=v1.0
ATGCGGTTTGGGAAGAAAGGGAAGTTGAGCCCACGGTGCATTGGGCCTTACGAGATCCTGAGTAGTTTTGAAGCTCTCAATCAACGGATTGTTGCTGTGG
TGGTTTATCCTATTCAGAGTGTTAAAGGGAAAGTGGTTATTGATGCCTTCCGTTCAGTCAATCCTCAAACCATGATTCTTGGCCAAGAACCACGACAGAC
AACTTCCAATGTTGGCCATCTGAACAAACCATCAATTCAAGCACTTATCCATGGACTGAACAGACATTACTATTCTATTGCTATCAAGTACCGAAAGAAT
GAAGTTGAGGAAAAAATGCTTCTCCACTTGCACAAGAGCAAGTGGACTGATGGATTGACACTCAGGAGATTCGACCGTCATTCAAAGACCAATGAGCAGA
CTGTTCAGATGCAGCGATGA
AA sequence
>Lus10012493 pacid=23149335 polypeptide=Lus10012493 locus=Lus10012493.g ID=Lus10012493.BGIv1.0 annot-version=v1.0
MRFGKKGKLSPRCIGPYEILSSFEALNQRIVAVVVYPIQSVKGKVVIDAFRSVNPQTMILGQEPRQTTSNVGHLNKPSIQALIHGLNRHYYSIAIKYRKN
EVEEKMLLHLHKSKWTDGLTLRRFDRHSKTNEQTVQMQR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G23540 Mov34/MPN/PAD-1 family protein... Lus10012493
[exp]
0 1
AT1G05675 UDP-Glycosyltransferase superf... Lus10010469
[exp]
2.8 0.7807
Lus10016118
[exp]
4.0 0.7807
AT1G15170 MATE efflux family protein (.1... Lus10042732
[exp]
4.9 0.6578
AT4G02780 ATCPS1, ABC33, ... GA REQUIRING 1, CPP synthase, ... Lus10004323
[exp]
5.5 0.7478
AT5G17540 HXXXD-type acyl-transferase fa... Lus10005660
[exp]
6.0 0.7111
AT5G39300 ATHEXPALPHA1.18... EXPANSIN 25, expansin A25 (.1) Lus10000305
[exp]
6.9 0.6984
AT3G07880 SCN1 SUPERCENTIPEDE1, Immunoglobuli... Lus10027327
[exp]
8.9 0.7048
AT5G06700 TBR TRICHOME BIREFRINGENCE, Plant ... Lus10033616
[exp]
11.0 0.6123
AT4G30720 PDE327 PIGMENT DEFECTIVE 327, FAD/NAD... Lus10010777
[exp]
18.5 0.5714
AT4G12410 SAUR-like auxin-responsive pro... Lus10028920
[exp]
21.6 0.4661

Lus10012493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.