Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10140 70 / 5e-15 Uncharacterised conserved protein UCP031279 (.1) AT1G58420 69 / 2e-14 Uncharacterised conserved protein UCP031279 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018665 [exp] 164 / 8e-52 AT1G10140 89 / 2e-22 Uncharacterised conserved protein UCP031279 (.1) Lus10007729 [exp] 163 / 5e-51 AT1G10140 82 / 1e-19 Uncharacterised conserved protein UCP031279 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G014500 [exp] 96 / 2e-25 AT1G58420 81 / 9e-20 Uncharacterised conserved protein UCP031279 (.1) Potri.014G014600 [exp] 95 / 6e-25 AT1G58420 87 / 4e-22 Uncharacterised conserved protein UCP031279 (.1) Potri.002G117100 [exp] 80 / 6e-19 AT1G58420 84 / 1e-20 Uncharacterised conserved protein UCP031279 (.1) Potri.009G086000 [exp] 48 / 5e-07 ND / Potri.014G006300 [exp] 47 / 9e-07 AT1G58420 56 / 3e-10 Uncharacterised conserved protein UCP031279 (.1) Potri.007G006100 [exp] 44 / 1e-05 AT1G58420 68 / 1e-14 Uncharacterised conserved protein UCP031279 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012496 pacid=23149341 polypeptide=Lus10012496 locus=Lus10012496.g ID=Lus10012496.BGIv1.0 annot-version=v1.0 ATGAAATCGAAAGCAGGGCAAGGGCAGAACATGCTAGTCCGCATGATGACATCCCCAATTCGGGCGCTGGGGAGAGCCAGAGATTTCTACGTCAACAGCT TCACCGAATGCACAACTGGAGGAAACCACATCAACCGCAGCCGCAGAACCCGTAACCCTTACTCTTCTACTAACCCTTATCCAGCCTCCCTTCCCCGCAG CATGAGTACCGCCTCCTCTGTCTCCAGCTACGATGGCGGCGAGGACCTCCGCGAGCTTGTGAGGGCGGCCTCCGTGAGATGCTACGGCCACAAGAACGAG GCGGAGATGTACGTTGAGCAGATGCGGCAGCTCCGCCAGCAGGAGCGGGAGGCCGCAAGAGTGGCCGCCGCTGCAGCCAAGACAGCGAATGTTCTTCCCA AGAGTGTGAGCGTTGGGATGGGGTTCATGGGCAGGATTGATGAGGATAATGCGTGTGAGGAGTTTGATGAGAATAATGCCGCAGCCGGCGGGGATGGTAA GAACAATAAGCAGGGTGTGGAGAAGTATTCCCGGAGCAAGAGCTATGCCCCTGCTTCCAAGCGCCTAACGGTTTTCTAA
AA sequence Show only first row Show all	>Lus10012496 pacid=23149341 polypeptide=Lus10012496 locus=Lus10012496.g ID=Lus10012496.BGIv1.0 annot-version=v1.0 MKSKAGQGQNMLVRMMTSPIRALGRARDFYVNSFTECTTGGNHINRSRRTRNPYSSTNPYPASLPRSMSTASSVSSYDGGEDLRELVRAASVRCYGHKNE AEMYVEQMRQLRQQEREAARVAAAAAKTANVLPKSVSVGMGFMGRIDEDNACEEFDENNAAAGGDGKNNKQGVEKYSRSKSYAPASKRLTVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58420			Uncharacterised conserved prot...		Lus10012496 [exp]	0	1
AT1G65690			Late embryogenesis abundant (L...		Lus10007364 [exp]	1.4	0.9711
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015208 [exp]	1.4	0.9756
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008187 [exp]	3.2	0.9547
AT3G05550			Hypoxia-responsive family prot...		Lus10020658 [exp]	3.5	0.9699
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10020136 [exp]	4.2	0.9578
AT3G62550			Adenine nucleotide alpha hydro...		Lus10029850 [exp]	6.7	0.9550
AT4G34150			Calcium-dependent lipid-bindin...		Lus10014088 [exp]	7.1	0.9471
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	9.7	0.9452
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10018631 [exp]	9.9	0.9315
AT2G41640			Glycosyltransferase family 61 ...		Lus10031057 [exp]	11.4	0.9599

Compare expression of checked genes

Lus10012496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.