Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007158 [exp] 775 / 0 ND / Lus10025017 [exp] 634 / 0 ND / Lus10012429 [exp] 504 / 2e-179 ND / Lus10011659 [exp] 497 / 2e-176 ND / Lus10022149 [exp] 165 / 1e-48 ND / Lus10022526 [exp] 145 / 4e-40 ND / Lus10039674 [exp] 130 / 2e-33 ND / Lus10024215 [exp] 129 / 2e-33 ND / Lus10015582 [exp] 124 / 1e-31 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012497 pacid=23143872 polypeptide=Lus10012497 locus=Lus10012497.g ID=Lus10012497.BGIv1.0 annot-version=v1.0 ATGAATCCTCTCCTCCTCAAAACCTTTTCTGGCCTCGTGCATCGAGATGATAGCTTTCGTCACCGATATCAGGAGGTGTTTCGCACATGTCCCATCCTTA CTCCAACTGCACTCACCCACCTCCCATTCGAAAGGTATGATCTCTTCGTCGCCGGTTTTCTACGAAACTTGGGATGGGAGTCTGCACTCCTTCAGGCACA GCAATCCTTCGCTCCTCTGGCCGTCCGACTGTTTTACTCCAATCTTCGGGAAAGCAGAGTTCACCCTGGAACAATCACATCGATAGTTCTGGGCGAGCAC GTTCGGTTCTCCCCTCAGACTCTGGCCACAACTCTCAATCTCTCCACTTCGGGATTCATCATTCGGACCTATGATGACATTTGGCGTCATGGTTTTGATA TGACTAAGGCGCTACGGGAGCTTCTGGATTCCAGCTGGACAGACATGCAACTGCCAACAACCCTACGAGTTACTATCCTTCCACCTCACTTACGACTTCT CCATTACTTTCTCACACGTAGTTTCCTTCCACGATCATATTCCAGAGATACTCTCTTGCCACTTGACATATTCGTTCTCTGGTGCGCAATCAATGGGAAA CCAGTGAGTCTGCCGCATCTTATGCTCATGTTCATGCTGGAGGCGAGGCTTGAGCAGTTTCCGGGCGACTTACCGTTTGCGCCACAAATCACTACTATGC TACTCAGGGTGGGAGTTGACCTCTATGGCCTCTGCGTCACGAAGCCTCACTTTCGTGCTGTGGGCGATGTCCTCTCTGTTCTGGATATTTCTCCCCTCTC CTCCCCAACCATTCCCACAGGGGGAGAAACAGCACCAGGCGACAGAAACAATGATAATGATTCCTCAGAAAAAGATTCCTCACCATGGTCTCTAAATGAC TCCCGAGAATATGCAAGTCTAGATGACAAACGAAAACAGCTGTCGGATCATGGGAATAAGGAGGAGACACCTCTCTCACATAGAGATGAGACTGACGAGA TCAAACTGCCTCATTGGGAAAAAAGACTTAAGATCTCTCCATTAGTCATTGCTGAAATCAATGCATCATTTGTGGAAGACTTCCCCGATCCGATAGAGAG GAAGGCTGCAAAAGAACAATGGAGACAAGAGATGCTCCGAGTGAAAACGCCAACTAGCAGGGATGAAGATGAGACTGAAGCCTATTCAGGCAAAAGGAAG AAGGACCATCATGAGATAGAGGATGACAGCAACCGTGACGATCAAGGAAAGCCTGAGGATCTGTTCAGACCAAATGCTGCAGACTTGATCTCTGATGAAA ACTTAGCTGAGAAGATTGTAGATGTTAACAAATACATCTTCATGAGCTCAAAACTAGTCTACTGGGCAAATAAACTCAAGATTGCTCACAAAATTGCAAC AGCAAAGAAAGGAAAGACAAAGGTAACTACTGAAGAGTGA
AA sequence Show only first row Show all	>Lus10012497 pacid=23143872 polypeptide=Lus10012497 locus=Lus10012497.g ID=Lus10012497.BGIv1.0 annot-version=v1.0 MNPLLLKTFSGLVHRDDSFRHRYQEVFRTCPILTPTALTHLPFERYDLFVAGFLRNLGWESALLQAQQSFAPLAVRLFYSNLRESRVHPGTITSIVLGEH VRFSPQTLATTLNLSTSGFIIRTYDDIWRHGFDMTKALRELLDSSWTDMQLPTTLRVTILPPHLRLLHYFLTRSFLPRSYSRDTLLPLDIFVLWCAINGK PVSLPHLMLMFMLEARLEQFPGDLPFAPQITTMLLRVGVDLYGLCVTKPHFRAVGDVLSVLDISPLSSPTIPTGGETAPGDRNNDNDSSEKDSSPWSLND SREYASLDDKRKQLSDHGNKEETPLSHRDETDEIKLPHWEKRLKISPLVIAEINASFVEDFPDPIERKAAKEQWRQEMLRVKTPTSRDEDETEAYSGKRK KDHHEIEDDSNRDDQGKPEDLFRPNAADLISDENLAEKIVDVNKYIFMSSKLVYWANKLKIAHKIATAKKGKTKVTTEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012497 [exp]	0	1
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10032078 [exp]	1.0	0.8035
					Lus10008258 [exp]	1.7	0.7363
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10014981 [exp]	6.0	0.7076
					Lus10011659 [exp]	18.3	0.7202
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	23.1	0.7431
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10005140 [exp]	24.7	0.7277
AT1G17450			B-block binding subunit of TFI...		Lus10015661 [exp]	25.4	0.7334
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Lus10040289 [exp]	33.2	0.7325
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039509 [exp]	36.2	0.7273
AT3G59100		ATGSL11	glucan synthase-like 11 (.1)		Lus10020751 [exp]	46.1	0.7176

Compare expression of checked genes

Lus10012497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.