Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01590 622 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022672 [exp] 850 / 0 AT5G01590 629 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G123900 [exp] 617 / 0 AT5G01590 689 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012500 pacid=23143839 polypeptide=Lus10012500 locus=Lus10012500.g ID=Lus10012500.BGIv1.0 annot-version=v1.0 ATGGGGTCAATCAACTTCTTCGACAAAAACTGGTTCAACAAGCCACCGAACCCACTCACTCCAGTCAACCTATTCTCTCTAGTCAACTCCTTCACTCCCA AACGGACAAACTCCCGAGCCGCATTCGCTTCCATCACCTCCGCAAATCTCTCTGATCCCAAGAAGCCCGATGAAAAGAAACCTCCGGAGGAGGCAAACTA CTACAAGCAGATGGTGGACCAGTACTTCTGGGAGTGTGAGAACGACCCGGACTACCGGCACGCGCCTGAAGTGGAGAAGATACTGACCGACGACCCTTTC CAGGAGAAGAAGGAGAATCCTAGCTCGGTGGAGGTGAAGGAGAACGAGGAGTGGTGGAAAGAGTTCAAGTCCAGTCCGATGGTTGAGTTCTGGTCCAGAG TTAACCAGATTGACGACACCATCAACCAGATCGAGCTGGATGAGAACGACGAGCCGTGCAATTGGGAGGATTCCGATCAGTGGCAGGCGGTGCCGCACGT TCCCGGCCTGGATGGACGGCCGATGCCGAGGAAGGCGATCAAGTCGGAGAGTGAGCGTGAGGATAAGTTTTGGGACTTTACCAGGCAGTTCTTCTTGGGG CTATGGGGGTTTAAGCAGAGACCTTATCCGCCTGGGAGGCCGATTGATGTTGCTCAAGCTGTTGGTTACAAGCAGCTGGAGAGACGCTACTATGACTTTA TCATGAGAAGTGGTGGATTTTTCTACAAGGATCGGTTGGGAAGAACAAGAGGGCCTATGGAGCTGATACAGCTGCAAACTGCGTGGGGTCATGGGATAAT TGACAAGAATACTTTTTTATGGATGGAAGATATGGACGAATGGGCTCCGATTCATATGATCTACGGGATGGAACCCGCCATTGCCACTTGGGACGCTAGA TTGAATGCATCGTGGACAGCGTTTTACCATAAATTTATTAACGGTATACCTACATCGACACCTGTCAAGGGGCACGAGCCGAAGACATATAAGCAGTTAC AACAAGAGGCTATAGAGAGCAGAAAGAGAGACTTGGCAGTTCTGAAAGCTAATGACGGCGTTTGGCCTGGAGTTAGAACTCCCAGCCATGCCCTATTCCT TTGGGCTAGTGGTCCTGAACTCACTCCTACCTTGGAACAAGACCATATGCCTAACAAATTCATACCTAGAGAGCTAAGGGATCGGTTGGCTAAGATCATC CCTGGGTTAAGGCCTTGGGAGGTCTTGAGTGTCGAGCAAGCAATGGATCAAATAACGTACGGTAGAGGGTGGTACCGCGAGCCACTAGGGTCATACATGA CAGGGCCTCCGTACATCAGGCAATGGAACAAGGATGTTATGAGAATAGGCAAGGCACTCGCTCGCGTTATGTCGGTAGCCAGAGAGACTTTCAGTCAGAC CATCCCTGGGTTCGATAGGATTATGGAGGAGGTCCGGGCAAATAAACGGCAAAGGGATAGGAAGAAGGCGAAGAAGAAGCGCAGACCAAATTGA
AA sequence Show only first row Show all	>Lus10012500 pacid=23143839 polypeptide=Lus10012500 locus=Lus10012500.g ID=Lus10012500.BGIv1.0 annot-version=v1.0 MGSINFFDKNWFNKPPNPLTPVNLFSLVNSFTPKRTNSRAAFASITSANLSDPKKPDEKKPPEEANYYKQMVDQYFWECENDPDYRHAPEVEKILTDDPF QEKKENPSSVEVKENEEWWKEFKSSPMVEFWSRVNQIDDTINQIELDENDEPCNWEDSDQWQAVPHVPGLDGRPMPRKAIKSESEREDKFWDFTRQFFLG LWGFKQRPYPPGRPIDVAQAVGYKQLERRYYDFIMRSGGFFYKDRLGRTRGPMELIQLQTAWGHGIIDKNTFLWMEDMDEWAPIHMIYGMEPAIATWDAR LNASWTAFYHKFINGIPTSTPVKGHEPKTYKQLQQEAIESRKRDLAVLKANDGVWPGVRTPSHALFLWASGPELTPTLEQDHMPNKFIPRELRDRLAKII PGLRPWEVLSVEQAMDQITYGRGWYREPLGSYMTGPPYIRQWNKDVMRIGKALARVMSVARETFSQTIPGFDRIMEEVRANKRQRDRKKAKKKRRPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01590			unknown protein		Lus10012500 [exp]	0	1
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10010686 [exp]	1.0	0.9487
AT1G06190			Rho termination factor (.1.2)		Lus10024898 [exp]	3.2	0.9418
AT4G26370			antitermination NusB domain-co...		Lus10010325 [exp]	3.9	0.9430
AT3G06980			DEA(D/H)-box RNA helicase fami...		Lus10039091 [exp]	4.0	0.9380
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10009521 [exp]	4.5	0.9465
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	5.3	0.9430
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10011129 [exp]	6.5	0.9274
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10005787 [exp]	6.5	0.9388
AT3G05510			Phospholipid/glycerol acyltran...		Lus10029891 [exp]	6.9	0.9406
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10013699 [exp]	9.1	0.8724

Compare expression of checked genes

Lus10012500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.