Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20650 107 / 1e-30 COPT5 copper transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022671 [exp] 189 / 1e-62 AT5G20650 176 / 2e-57 copper transporter 5 (.1) Lus10007092 [exp] 117 / 4e-34 AT5G20650 169 / 6e-55 copper transporter 5 (.1) Lus10040925 [exp] 108 / 1e-30 AT5G20650 142 / 2e-44 copper transporter 5 (.1) Lus10009819 [exp] 103 / 1e-28 AT5G20650 147 / 5e-46 copper transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G140700 [exp] 130 / 2e-39 AT5G20650 151 / 7e-48 copper transporter 5 (.1) Potri.006G219200 [exp] 103 / 4e-29 AT5G20650 140 / 1e-43 copper transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04145 [flax] [poplar] Ctr Ctr copper transporter family
Representative CDS sequence Show only first row Show all	>Lus10012501 pacid=23143873 polypeptide=Lus10012501 locus=Lus10012501.g ID=Lus10012501.BGIv1.0 annot-version=v1.0 ATGATGCACATGACATTCTACTGGGGAACCAAAGTAACCCTGCTAATCGATTCATGGAAGACCGATTCCTTACTCTCTTACCTCCTCACTCTACTCGCCT GCTTCCTCTTCTCCGCCTTCTACCAGTACCTCGAAGATCGCCGCATCCGATTCAAGTCCTCTTCCTCCTCCGCCACCCAACCGCCGCCTTCAGTCGACGC TCCTCTCCTCCAGCTTCTCAAGCTCAATAGCAGCAGTCCGACCACCAAGTATGTAGGAGCTCTACTGTTTGGAGTCAACTCCGCGATCGGCTACTTGTTG ATGCTCGCCGTCATGTCTTTCAACGGTGGCGTCTTCGTTACCGTAGTCCTCGGCTTGACGATCGGGTACTTGTTGTTCCGATGCGGCGGAGACGAGGAGG AGGTCGTCGTCGCCGTGGATAATACCTGCGCTTGTGCCTGA
AA sequence Show only first row Show all	>Lus10012501 pacid=23143873 polypeptide=Lus10012501 locus=Lus10012501.g ID=Lus10012501.BGIv1.0 annot-version=v1.0 MMHMTFYWGTKVTLLIDSWKTDSLLSYLLTLLACFLFSAFYQYLEDRRIRFKSSSSSATQPPPSVDAPLLQLLKLNSSSPTTKYVGALLFGVNSAIGYLL MLAVMSFNGGVFVTVVLGLTIGYLLFRCGGDEEEVVVAVDNTCACA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10012501 [exp]	0	1
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015807 [exp]	2.4	0.8601
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10040079 [exp]	3.9	0.8047
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Lus10043002 [exp]	4.2	0.8184
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	4.2	0.8501
AT1G57680			unknown protein		Lus10008842 [exp]	5.9	0.8217
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10006092 [exp]	6.1	0.7833
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10040669 [exp]	8.0	0.8288
AT3G18410			Complex I subunit NDUFS6 (.1.2...		Lus10009027 [exp]	9.2	0.8423
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	12.5	0.8242
AT1G64700			unknown protein		Lus10001663 [exp]	13.4	0.8160

Compare expression of checked genes

Lus10012501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.