Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00620 444 / 1e-152 EMB3127 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) AT4G00600 352 / 1e-117 Amino acid dehydrogenase family protein (.1) AT3G12290 340 / 3e-113 Amino acid dehydrogenase family protein (.1) AT2G38660 342 / 5e-113 Amino acid dehydrogenase family protein (.1.2.3.4) AT5G01580 151 / 8e-42 OSH1 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT1G07080 147 / 4e-40 Thioredoxin superfamily protein (.1) AT4G12870 127 / 4e-33 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12890 122 / 2e-31 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12960 119 / 3e-30 GILT, AtGILT gamma-interferon-responsive lysosomal thiol reductase, Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1), Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.2) AT4G12900 116 / 3e-29 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022670 [exp] 927 / 0 AT4G00620 527 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10006425 [exp] 491 / 2e-171 AT4G00620 529 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10011368 [exp] 490 / 5e-171 AT4G00620 523 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10017822 [exp] 423 / 3e-145 AT4G00620 488 / 4e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10018843 [exp] 422 / 4e-145 AT4G00620 489 / 1e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10034187 [exp] 341 / 2e-112 AT2G38660 473 / 5e-168 Amino acid dehydrogenase family protein (.1.2.3.4) Lus10043398 [exp] 341 / 2e-112 AT2G38660 469 / 2e-166 Amino acid dehydrogenase family protein (.1.2.3.4) Lus10002203 [exp] 162 / 1e-45 AT5G01580 238 / 2e-79 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) Lus10026384 [exp] 157 / 1e-43 AT1G07080 281 / 1e-95 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157100 [exp] 449 / 8e-155 AT4G00620 545 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Potri.006G114100 [exp] 356 / 2e-118 AT2G38660 456 / 2e-161 Amino acid dehydrogenase family protein (.1.2.3.4) Potri.011G098600 [exp] 332 / 7e-110 AT3G12290 473 / 3e-170 Amino acid dehydrogenase family protein (.1) Potri.016G122000 [exp] 212 / 1e-64 AT1G07080 185 / 3e-58 Thioredoxin superfamily protein (.1) Potri.006G103000 [exp] 200 / 9e-60 AT1G07080 196 / 3e-62 Thioredoxin superfamily protein (.1) Potri.016G121900 [exp] 157 / 3e-44 AT5G01580 263 / 3e-89 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) Potri.009G076200 [exp] 149 / 5e-41 AT1G07080 278 / 3e-94 Thioredoxin superfamily protein (.1) Potri.016G122200 [exp] 139 / 4e-37 AT1G07080 204 / 3e-65 Thioredoxin superfamily protein (.1) Potri.012G107300 [exp] 138 / 1e-36 AT1G07080 205 / 1e-65 Thioredoxin superfamily protein (.1) Potri.012G107600 [exp] 136 / 5e-36 AT1G07080 204 / 2e-65 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF03227 [flax] [poplar] GILT Gamma interferon inducible lysosomal thiol reductase (GILT) CL0603 [flax] [poplar] AA_dh_N PF00763 [flax] [poplar] THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CL0063 [flax] [poplar] NADP_Rossmann PF02882 [flax] [poplar] THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
Representative CDS sequence Show only first row Show all	>Lus10012502 pacid=23143861 polypeptide=Lus10012502 locus=Lus10012502.g ID=Lus10012502.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTTCTAAAGCTATTTCCTCTCTATTCGTTGCAACTTTCTTGATATCAGTTGCTTTCTTTTCTCATTGTTCTGTTGCTTCTTCTTCTAATC AGAAGGTGAATCTCTCGGTTTACTATGAAACACTGTGTCCACCTTGTGCTCAGTTCATAGTTCAAAATCTCATCACCATTTTCAACAATGGCATCATTGA CATTGTCAACCTGAAGCTCATACCTTGGGGGAATGCTCGTCTCAGTGGGACGACGAACAACACCTTCATCTGCCAGAATGGTCCTGATGAATGCGAGTTG AACACAGTCCAAGCTTGTGCCATCGACGTCCTAAATAACGTGGACAAAAGCTATGGTCTGATTTCCTGCATGGAGCTGTTTGTACTGGTTGGCCAGCATC AGGATTGGCATCAATGTTTCTCCACTTTAGGATTGTCTGACAAAGATATCCTCAGCTGCTCTAACAGTACCAATGGAACCAAGCTTGACATTTTACATAG CCAGGAGACTTCTCGTCTGATCCCGCCTCACACATTCGTGCCATGGGTCGTCGTGAATAATCAGTCGATAGGAAAGGTTCTAATCCCACCCTCGATGCCC AAAATCCATTGCACCCTGCTCGTCACCTTAAGACTTAAACCCTTACCTAAAACCTCTGTCCACCTTCTTCCTCGCCAGCCACTGCCTCAGCCGCCGTCGA TCCAAGTCCGTCCTCCGCTCCAAGGCGAAATGAAGCTTTCAATGGCGTCAATGAACTTCGCCAACTGTCTATCATCCTCATCCACGGCTCGTCTCCTCCC ATTTGGGTCTTCCTCCGCCATCTACCTCCGCTGCTCCGTTCCTCGTCAGGCCAAAACCCTCACCCTCACAGTAAACGCAGCAATGGCTAACGAGCCTTCG GTTTCGGCTTGTGCTAAGGTGATTGATGGCAAATTGGTAGCCAAACAGATCAGGCAGGAGATTGCAGGTGAAGTATCGGGAATGAAGGACGCAATCGGTG TTGTTCCAGGGCTAGCAGTCATGCTCATCGGAGACAGGAAGGACTCCGCAACTTACGTACGAAACAAGAAGAAAGCTTGCCGGAGGATTCCGCTGAAGCT GATGTTATCAATTCCTTCGAAGTCTGCTTGCCGGAGGATTCCGCTGAAGCTGATGTTCTCAATTTCATCTCAGAATTCAATCATGATCCTGCAGTCCATG GCATTCTTGTCCAGCTTCCCCTACCAAAGAGTCGCAACCCATGTGTGTGACGTCACTGGCGTGTTAAGAACTCATATGAACGAACAGAACATCTTGAATG CGGTCAGCATCGAGAAAGACGTTGATGGTTTCCACCCCTTGAACATCGGCCGTCTCGCGATGCGCGGTAGGGAACCGCTGTTCGTACCGTGCACTCCGAA AGGGTGCATCGAGTTGTTGCGTAGGTACGGGGTTCCAATCAAAGGGAAGCGAGCGGTTGTGATTGGCCGGAGCAATATCGTCGGGATGCCTACTGCTCTA TTGCTTCAGAGGGAGGATGCTACTGTTACTATCGTCCATTCGAGGACGAGTAATCCTGAAGAGATAGTGAAAGAAGCTGACATAGTGATCTCTGCAGTAG GCCAACCTAACATGGTGAGAGGGAGCTGGCTGAAGCCCGGTGCTATTGTCATTGATGTCGGTATCAATCCGGTCGAGGATGCGACACGTCCTCGAGGTTA CAGGTTGGTTGGGGATGTGTCCTACGAGGAGGCCAGCGAAGTGGCGTCAGCAGTGACTCCCGTACCGGGGGGAGTCGGTCCGATGACGGTAGCAATGCTT CTTTCCAATACCCTCACCTCAGCAAAGAGAATACACAGCTTCCAGTGA
AA sequence Show only first row Show all	>Lus10012502 pacid=23143861 polypeptide=Lus10012502 locus=Lus10012502.g ID=Lus10012502.BGIv1.0 annot-version=v1.0 MASSSKAISSLFVATFLISVAFFSHCSVASSSNQKVNLSVYYETLCPPCAQFIVQNLITIFNNGIIDIVNLKLIPWGNARLSGTTNNTFICQNGPDECEL NTVQACAIDVLNNVDKSYGLISCMELFVLVGQHQDWHQCFSTLGLSDKDILSCSNSTNGTKLDILHSQETSRLIPPHTFVPWVVVNNQSIGKVLIPPSMP KIHCTLLVTLRLKPLPKTSVHLLPRQPLPQPPSIQVRPPLQGEMKLSMASMNFANCLSSSSTARLLPFGSSSAIYLRCSVPRQAKTLTLTVNAAMANEPS VSACAKVIDGKLVAKQIRQEIAGEVSGMKDAIGVVPGLAVMLIGDRKDSATYVRNKKKACRRIPLKLMLSIPSKSACRRIPLKLMFSISSQNSIMILQSM AFLSSFPYQRVATHVCDVTGVLRTHMNEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLRRYGVPIKGKRAVVIGRSNIVGMPTAL LLQREDATVTIVHSRTSNPEEIVKEADIVISAVGQPNMVRGSWLKPGAIVIDVGINPVEDATRPRGYRLVGDVSYEEASEVASAVTPVPGGVGPMTVAML LSNTLTSAKRIHSFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10012502 [exp]	0	1
AT4G17486			PPPDE putative thiol peptidase...		Lus10043293 [exp]	8.5	0.7749
AT1G06260			Cysteine proteinases superfami...		Lus10017674 [exp]	9.8	0.7634
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004919 [exp]	11.0	0.7755
AT2G16750			Protein kinase protein with ad...		Lus10025103 [exp]	11.7	0.7707
AT4G17486			PPPDE putative thiol peptidase...		Lus10019437 [exp]	16.3	0.7609
AT1G60010			unknown protein		Lus10029193 [exp]	27.7	0.7295
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10025388 [exp]	32.9	0.6404
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10037686 [exp]	36.0	0.6927
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10033289 [exp]	41.3	0.7454
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10043256 [exp]	42.7	0.6716

Compare expression of checked genes

Lus10012502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.