Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07080 169 / 4e-52 Thioredoxin superfamily protein (.1) AT4G12890 160 / 5e-49 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT5G01580 158 / 3e-48 OSH1 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12900 155 / 6e-47 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12870 150 / 6e-45 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12960 138 / 2e-40 GILT, AtGILT gamma-interferon-responsive lysosomal thiol reductase, Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1), Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022669 [exp] 395 / 1e-141 AT1G07080 170 / 2e-52 Thioredoxin superfamily protein (.1) Lus10026384 [exp] 168 / 1e-51 AT1G07080 281 / 1e-95 Thioredoxin superfamily protein (.1) Lus10042270 [exp] 168 / 2e-51 AT1G07080 285 / 5e-97 Thioredoxin superfamily protein (.1) Lus10002203 [exp] 164 / 3e-50 AT5G01580 238 / 2e-79 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) Lus10022670 [exp] 129 / 3e-34 AT4G00620 527 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10012502 [exp] 108 / 7e-27 AT4G00620 442 / 6e-152 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G107600 [exp] 191 / 1e-60 AT1G07080 204 / 2e-65 Thioredoxin superfamily protein (.1) Potri.012G107300 [exp] 191 / 2e-60 AT1G07080 205 / 1e-65 Thioredoxin superfamily protein (.1) Potri.016G122200 [exp] 189 / 1e-59 AT1G07080 204 / 3e-65 Thioredoxin superfamily protein (.1) Potri.016G121900 [exp] 187 / 2e-59 AT5G01580 263 / 3e-89 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) Potri.006G103000 [exp] 171 / 6e-53 AT1G07080 196 / 3e-62 Thioredoxin superfamily protein (.1) Potri.009G076200 [exp] 168 / 7e-52 AT1G07080 278 / 3e-94 Thioredoxin superfamily protein (.1) Potri.016G122000 [exp] 151 / 1e-45 AT1G07080 185 / 3e-58 Thioredoxin superfamily protein (.1) Potri.001G281004 [exp] 151 / 3e-45 AT1G07080 266 / 8e-90 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF03227 [flax] [poplar] GILT Gamma interferon inducible lysosomal thiol reductase (GILT)
Representative CDS sequence Show only first row Show all	>Lus10012503 pacid=23143821 polypeptide=Lus10012503 locus=Lus10012503.g ID=Lus10012503.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCATTTCTCTCCTTTCTCCTCCTCTCTTCTTTGCTCTTCTCACCAATTCGATCTGACGATGGCTTTTTCGACGAGAAGGACGAGTCTGATC GAGTCAACTTGACTCTGTACTACGAAACTCGCTGCCCTTACTGCCGCGACTTCATCGTGAACCCTCTCGCCAAAGCTATGGCTACCGATCTCATCGACAT TGTCAATCTCAGACTCGTCCCTTGGGGCAATGCTTACATTGAAGGCTCCCGAGTCATTTGTCAGCACGGTGAAGATGAATGCTACCTTAACACGATACAC GCCTGCATTCTCGCGATTGCGAAGCCGCGGTTCCAGTTCGAATTCATCAAGTGCACCGAGGAGGAATCGTCGAGTAACCCGTCAATTGTATGGAGAACTT GTGCTAATGACTTGCGGTTCCCCCCAATTCCCATCGATGGTTGCTATTATAACGGAATGGGGAAGAAGCTTCTGCTGAATTATGGGGACGAGACTATGAC CCTGAAGCCGCCTCTTAGAGGCGTACCGTGGGTTACTGTGAATGGTGTTCCGCTGAATCAGGATTTCGAGAAGTTCGTGTCGTATGTCTGCAAAGCGTAC AGAGGCAAGTCGCTGCCTAATGCTTGCAGGAACCGTAGCTTCGACAGGAAGAAGGAAATCACAGAGCAATCGATCTGTTACAGAACATAA
AA sequence Show only first row Show all	>Lus10012503 pacid=23143821 polypeptide=Lus10012503 locus=Lus10012503.g ID=Lus10012503.BGIv1.0 annot-version=v1.0 MASPFLSFLLLSSLLFSPIRSDDGFFDEKDESDRVNLTLYYETRCPYCRDFIVNPLAKAMATDLIDIVNLRLVPWGNAYIEGSRVICQHGEDECYLNTIH ACILAIAKPRFQFEFIKCTEEESSSNPSIVWRTCANDLRFPPIPIDGCYYNGMGKKLLLNYGDETMTLKPPLRGVPWVTVNGVPLNQDFEKFVSYVCKAY RGKSLPNACRNRSFDRKKEITEQSICYRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07080			Thioredoxin superfamily protei...		Lus10012503 [exp]	0	1
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10002040 [exp]	2.8	0.9500
AT3G06670			binding (.1.2)		Lus10021547 [exp]	3.5	0.9545
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10017134 [exp]	3.5	0.9476
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10030091 [exp]	3.9	0.9593
AT5G56850			unknown protein		Lus10032679 [exp]	6.5	0.9206
AT2G33450			Ribosomal L28 family (.1)		Lus10023747 [exp]	7.9	0.9559
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10015380 [exp]	8.0	0.9458
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10013083 [exp]	9.4	0.9322
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10002414 [exp]	11.2	0.9102
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10017100 [exp]	12.4	0.9474

Compare expression of checked genes

Lus10012503 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.