Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63640 405 / 6e-139 ENTH/VHS/GAT family protein (.1) AT1G76970 191 / 7e-56 Target of Myb protein 1 (.1) AT4G32760 192 / 1e-54 ENTH/VHS/GAT family protein (.1.2) AT1G21380 188 / 3e-54 Target of Myb protein 1 (.1) AT3G08790 187 / 6e-53 ENTH/VHS/GAT family protein (.1) AT2G38410 152 / 3e-40 ENTH/VHS/GAT family protein (.1) AT5G01760 143 / 1e-37 ENTH/VHS/GAT family protein (.1) AT5G16880 81 / 3e-16 Target of Myb protein 1 (.1.2.3) AT1G06210 64 / 6e-11 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022667 [exp] 747 / 0 AT5G63640 450 / 1e-156 ENTH/VHS/GAT family protein (.1) Lus10022140 [exp] 189 / 2e-53 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10014155 [exp] 176 / 6e-49 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10022753 [exp] 176 / 8e-49 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 175 / 3e-48 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10028649 [exp] 174 / 1e-47 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10018948 [exp] 166 / 2e-46 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10029739 [exp] 162 / 1e-44 AT1G21380 518 / 0.0 Target of Myb protein 1 (.1) Lus10042770 [exp] 160 / 8e-44 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G138600 [exp] 446 / 3e-155 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 443 / 2e-154 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T010700 [exp] 443 / 2e-154 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.018G039100 [exp] 197 / 2e-56 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.005G184900 [exp] 185 / 4e-53 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.006G241000 [exp] 187 / 6e-53 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.006G106500 [exp] 186 / 3e-52 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.002G075500 [exp] 183 / 4e-52 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.016G131900 [exp] 178 / 3e-49 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.019G050000 [exp] 87 / 2e-18 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10012506 pacid=23143825 polypeptide=Lus10012506 locus=Lus10012506.g ID=Lus10012506.BGIv1.0 annot-version=v1.0 ATGGCATCTGACCTTGTTGATTCTGCAACAAGTGAGAAATTGGTTGAAGTAGACTGGGCCAAGAACATTGAAATTTGTGAACTGATTGCACGTGACCAAA GGCAAGCTAAGGATGTTGTCAAAGCAATTAAAAAGCGTTTTGGGAGTAAGAGTCCTAATGTCCAATTGCATGCAGTGATGTTGCTGGAGATGCTGATGAA CAATATTGGAGAACCTGTCCATCAGCAGGTGATCGATAGTGGCATTTTGGGGATTCTTGTGAAGATAGTTAAGAAAAAGACCGAGTTACCCGTACGAGAG AGGATATTTCTTCTTCTAGATGCTACGCAGACGTCCCTTGGTGGTGCTTCAGGGAAGTTTCCTCAGTATTACTCTGCATACTATGATTTGGTGAGTGCCG GAGTAAAATTCCCCGAAAGATCTCGTGAAGTACCATCAAGTCGTCCTACTTCACAGCCAAATAACAGAGTAAATCAGCCTACTCCACAGTTGGATAATGG ATCCAATCGTCCTACAGTACGATCCTCCGATCACACAACAACACTTACAGAGGAACTTGCAACCTCTAGACAGCAACCAGAGCCTCAAGCTGTTCCAGAG TCTAGTATTCTTCAAAAGGCTGGCAATGCATTAGAAGTATTGAAAGAAGTCCTTGATGCTGTTGATTCTCAGAACCCCGAGGCAGCAAAGGATGAGTTCA CACTTGATCTTGTGGAGCAGTGTTCTTTCCAAAAGCAAAGAGTAATGCATCTTGTGATGACTTGTCGGGATGAGAAAGTGGTTTCTAGAGCAATCGCATT AAATGAAGAGCTCCAGAATGTCCTAACCAGACATGACGATCTTCTTGCTGGTAGACCCTTGAACTCAAACAGGTCTAGGGTTTCCAGTGTACTTACCTCA ACTGAAAACCGTGTTAGTCGTGAGGTACACGAGGAGGAAGAAGAAGAAGAAGAAATCGAGCAACTATCACGAAGGTTACGGAAAGGGAAAGCTTGTGCAA GGGCGGAAGACGAGGAGGCAAGCTCAAAGGAGCAAAAACACCAGTTGGGCTTATTTGCAACCTCCGTTCCGCCTAGTGACATGCTGATCCGTCCCCTGAT CCGGCCAGTTCAGTCGCCAGAGGGCGGGAGAGATCCTGGAGTTGCAATCCCACCTCCTCCAGCAAAGCACATGGAGAGGGAGAAGTTCTTCAAGGAGAAC AAAGTGGACGGCTCTTCTGTGTCTGGCCATATGAGAGGACTTTCATTACACAGTCGCAACGGCAGCAGTTCTCGCAGCGGAAGCATAGATTTTGCTGAAT AA
AA sequence Show only first row Show all	>Lus10012506 pacid=23143825 polypeptide=Lus10012506 locus=Lus10012506.g ID=Lus10012506.BGIv1.0 annot-version=v1.0 MASDLVDSATSEKLVEVDWAKNIEICELIARDQRQAKDVVKAIKKRFGSKSPNVQLHAVMLLEMLMNNIGEPVHQQVIDSGILGILVKIVKKKTELPVRE RIFLLLDATQTSLGGASGKFPQYYSAYYDLVSAGVKFPERSREVPSSRPTSQPNNRVNQPTPQLDNGSNRPTVRSSDHTTTLTEELATSRQQPEPQAVPE SSILQKAGNALEVLKEVLDAVDSQNPEAAKDEFTLDLVEQCSFQKQRVMHLVMTCRDEKVVSRAIALNEELQNVLTRHDDLLAGRPLNSNRSRVSSVLTS TENRVSREVHEEEEEEEEIEQLSRRLRKGKACARAEDEEASSKEQKHQLGLFATSVPPSDMLIRPLIRPVQSPEGGRDPGVAIPPPPAKHMEREKFFKEN KVDGSSVSGHMRGLSLHSRNGSSSRSGSIDFAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10012506 [exp]	0	1
AT1G67190			F-box/RNI-like superfamily pro...		Lus10020611 [exp]	3.6	0.8493
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030586 [exp]	3.9	0.8331
AT2G17550			unknown protein		Lus10016693 [exp]	4.9	0.8242
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10041571 [exp]	6.3	0.8099
AT3G61260			Remorin family protein (.1)		Lus10017811 [exp]	7.0	0.8170
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10026731 [exp]	12.8	0.8058
AT5G55960			unknown protein		Lus10016650 [exp]	13.0	0.7788
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10011290 [exp]	13.4	0.8279
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Lus10013781 [exp]	13.9	0.7808
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10021310 [exp]	16.7	0.7510

Compare expression of checked genes

Lus10012506 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.