Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30110 1706 / 0 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G06460 1692 / 0 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT2G21470 138 / 2e-33 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G19180 100 / 1e-21 ECR1 E1 C-terminal related 1 (.1) AT5G50680 84 / 4e-17 ATSAE1B ARABIDOPSIS THALIANA SUMO ACTIVATING ENZYME 1B, SUMO activating enzyme 1B (.1.2) AT5G50580 84 / 4e-17 AT-SAE1-2, SAE1B SUMO-activating enzyme 1B (.1.2) AT4G24940 77 / 8e-15 ATSAE1A, AT-SAE1-1, SAE1A SUMO-activating enzyme 1A (.1) AT1G05180 60 / 7e-09 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G32410 59 / 9e-09 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT1G05350 48 / 3e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031292 [exp] 1651 / 0 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031862 [exp] 1638 / 0 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10022666 [exp] 927 / 0 AT2G30110 768 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10022665 [exp] 910 / 0 AT2G30110 748 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10017479 [exp] 132 / 1e-31 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10028804 [exp] 115 / 5e-26 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10034043 [exp] 95 / 6e-20 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10010507 [exp] 94 / 6e-20 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1) Lus10008977 [exp] 84 / 1e-16 AT4G24940 473 / 1e-168 SUMO-activating enzyme 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280600 [exp] 1777 / 0 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075700 [exp] 1774 / 0 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 1763 / 0 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G120200 [exp] 130 / 7e-31 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 130 / 7e-31 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.008G204000 [exp] 99 / 3e-21 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.010G031900 [exp] 96 / 2e-20 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.012G100800 [exp] 86 / 9e-18 AT4G24940 490 / 4e-176 SUMO-activating enzyme 1A (.1) Potri.001G355800 [exp] 79 / 4e-15 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Potri.015G099000 [exp] 77 / 8e-15 AT4G24940 498 / 4e-179 SUMO-activating enzyme 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00899 [flax] [poplar] ThiF ThiF family CL0063 [flax] [poplar] PF10585 [flax] [poplar] UBA_e1_thiolCys Ubiquitin-activating enzyme active site CL0063 [flax] [poplar] PF09358 [flax] [poplar] E1_UFD Ubiquitin fold domain
Representative CDS sequence Show only first row Show all	>Lus10012507 pacid=23143840 polypeptide=Lus10012507 locus=Lus10012507.g ID=Lus10012507.BGIv1.0 annot-version=v1.0 ATGACTCTTGGAAACGGAAATCCACAGGAAATTGATGAAGATCTGCACAGTCGTCAGCTGGCTGTGTATGGCCGTGAGACTATGCGGCGGCTGTTTGCTT CCAATGTCCTCATATCGGGGATAAATGGACTCGGTGCTGAGATCGCCAAGAACCTTGTTCTTGCTGGAGTCAAGTCTGTGACCTTGCACGATGAAGGACT GGTTGAGAAATGGGATCTGTCCAGCAATTTTGTCTTCTCTGAGGGTGATGTCGGGAAGAACAGGGCACTTGCTTGTGTCCAGAAGCTACAAGAACTCAAC AACTCCGTTGTGATTTCCACCTTAACTGCCCCACTGAAGAAGGAACAACTTTCTGATTTCCAGGCAGTTGTATTCACTGATAGCAGCTTAGAAAAAGCAA TCGAGTTTGATGATTACTGCCGCACTCATCAACCACCCATTGCTTTCATCAAATCTGAAGTCCGGGGCCTTTTTGGTAGTGTGTTCTGTGACTTTGGCCC TGAATTCACTGTTTTTGATGTGGATGGCGAGGATGCCCATACAGGCATAATTGCTTCGATCAGCAATGATAACCCTGCCCTCATAGCTTGTGTTGATGAT GAGAGGGTGGAGCTTCAAGATGGTGATTTAGTTGTTTTCTCTGAAGTAGATGGTATGGTTGAACTAAATGATGGGAAGCCAAGGAAGGTTAAGAATGCTA GACCCTATTCATTTAACATTGAGGAGGACACCACCAATTTTTCTGCTTATATCAAAGGTGGCATTGTCACACAAGTGAAGCAACCAAAGGTTTTGAGCTT TAAGTCTTTGCGAGATGCAATGAAGGAACCTGGCGATTTCCTTTTGAGCGACTTCTCCAAGTTTGATCGTCCACCTCTCTTGCACTTGGCATTCCAGGCA CTGGATAAGTTTGTTGCAGAGTTGGGTCGCTATCCAGTTGCTGGATCAGAGGATGATGCCCAGAAATTTTTGTTGTTGGTTAGTAATATCAATGATAATG CAGGTGATGGTAGGATTGAAGAGATTGACCAGAAGATTCTTCGCCACTTTGCTTTTGGTGCAAGAGCTGTGCTGAATCCTATGGCTGCCATGTTTGGTGG ACTTGTTGGACAGGAGGTTGTGAAGGCTTGCTCTGGGAAATTCCACCCGTTATTCCAGTTTTTCTACTTCGACTCAGTTGAATCGCTCCCGACAGAGCCC TTGGATCCCAATGACCTGAAACCCTTAAACAGTCGCTATGATGCTCAGATTTCAGTTTTTGGGGCTAAGCTTCAGAAGAAAATGGAAGATGCAAAAGTGT TTATGGTAGGCTCTGGTGCACTTGGTTGTGAGTTTCTGAAGAACTTAGCTTTGATGGGGGTTGCATGTGGTAAACAAGGAAAGCTTACAATTACTGATGA TGATGTCATTGAGAAGAGCAACCTTAGCAGGCAATTCCTATTCCGTGATTGGAATATTGGGCAAGCGAAATCAACTGTCGCTGCTACTGCCGCATCTCTT ATAAATCCTAGTTTCAACATTGAAGCATTGCAGAATCGTGCCAGTCCGGAAACTGAAACTGTGTTTGATGATACATTCTGGGAGAACCTAACTGTGGTCA TCAATGCCCTCGATAACGTGAATGCTAGGCTATACATTGATGGAAGATGCTTGTATTTCCAGAAGCCACTTCTCGAGTCAGGAACCCTGGGTGCCAAGTG TAACACACAGATGGTCATTCCACATCTAACTGAAAATTACGGGGCCTCGCGTGACCCACCTGAAAAGCAAGCCCCCATGTGTACAGTTCACTCATTCCCT CACAACATCGACCACTGTCTCACATGGGCACGTTCTGAATTTGAGGGTTTGCTTGAGAAGACTCCTGCGGAGGTAAATGCCTACTTGTCTGGTCCGGTGG AGTACGCCACTGCAATGAAGAATGCTGGTGATGCCCAGGCAAAAGACAACTTGGAACGTGTTCTCGAGTGCCTTGAGAAAGATAGATGCTTGGAGTTCCA GGACTGCATCACTTGGGCTCGTCTGAAATTTGAAGATTACTTTGTCAACCGTGTAAAACAGCTGACATTCACTTTCCCTGAGGATGCCTTGACTAGTAGT GGAACCCCATTCTGGTCTGCACCAAAGAGATTTCCCCGCCCTCTTCAGTTCTCAACTGACGACACCACACACCTTCACTTTGTCTTGGCTGGAGCCATCT TACGTGCCGAAATCTTTGGAATTCCAGTACCTGACTGGGTTAAGTCTTCCACAAAGCTCGCTGATGCTATTAATAATGTGATCGTTCCAGATTTCGAACC TAAGACGGGTGTAAAGATTGAAACAGATGAGAAGGCAACCAACGTTCCTGCAGCTTCGATTGATGATGCCAAAGTTATTGATGAGCTTGTTATGAAGCTG GAAGCTTGCAGGCAGCAGCTAGTGCCTGGATTCAAAATGGCTCCTATCGAGTTTGAAAAGGACGATGACACGAACTATCACATGGACCTGATAGCCGGAC TGGCAAACATGAGGGCAAGGAACTACGGCATTCCAGAAGTAGACAAACTCAAGGCCAAATTCATCGCTGGCAGAATCATCCCGGCAATTGCCACATCCAC CGCCATGGCAACAGGCCTCGTCTGCTTGGAGCTGTACAAGGTTCTAGACGGAGGACACAAGCTCGAGGATTACAGAAACAGCTTCGCCAACCTGGCACTC CCTCTCTTCTCCATCGCAGAGCCCGTCCCTCCCAAGGTGATCAAGCATCAAGACATGAGCTGGACCGTGTGGGACCGATGGATCGTCGAGAACAACCCGA CTGTGCGAGAGCTTCTCAAGTGGCTTTCGGACAAGGGCCTGGAGGCATACAGCATCTCCTATGGTAGCTGTCTTCTGTACAACACTATGTTTCCGCGGCA CAAGGACCGTATGGATCGGAAGATGGTTGATCTTGCTAGGGAAGTAGCCAAGGCTGAGTTGCCTCCGAACCGACGCCACTTCGATGTCGTGGTTGCCTGC GAGGACGAGGAGGAAAAGGAAGTTGATATCCCGCAGGTCTCCATTTACTTTTAG
AA sequence Show only first row Show all	>Lus10012507 pacid=23143840 polypeptide=Lus10012507 locus=Lus10012507.g ID=Lus10012507.BGIv1.0 annot-version=v1.0 MTLGNGNPQEIDEDLHSRQLAVYGRETMRRLFASNVLISGINGLGAEIAKNLVLAGVKSVTLHDEGLVEKWDLSSNFVFSEGDVGKNRALACVQKLQELN NSVVISTLTAPLKKEQLSDFQAVVFTDSSLEKAIEFDDYCRTHQPPIAFIKSEVRGLFGSVFCDFGPEFTVFDVDGEDAHTGIIASISNDNPALIACVDD ERVELQDGDLVVFSEVDGMVELNDGKPRKVKNARPYSFNIEEDTTNFSAYIKGGIVTQVKQPKVLSFKSLRDAMKEPGDFLLSDFSKFDRPPLLHLAFQA LDKFVAELGRYPVAGSEDDAQKFLLLVSNINDNAGDGRIEEIDQKILRHFAFGARAVLNPMAAMFGGLVGQEVVKACSGKFHPLFQFFYFDSVESLPTEP LDPNDLKPLNSRYDAQISVFGAKLQKKMEDAKVFMVGSGALGCEFLKNLALMGVACGKQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAATAASL INPSFNIEALQNRASPETETVFDDTFWENLTVVINALDNVNARLYIDGRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFP HNIDHCLTWARSEFEGLLEKTPAEVNAYLSGPVEYATAMKNAGDAQAKDNLERVLECLEKDRCLEFQDCITWARLKFEDYFVNRVKQLTFTFPEDALTSS GTPFWSAPKRFPRPLQFSTDDTTHLHFVLAGAILRAEIFGIPVPDWVKSSTKLADAINNVIVPDFEPKTGVKIETDEKATNVPAASIDDAKVIDELVMKL EACRQQLVPGFKMAPIEFEKDDDTNYHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNSFANLAL PLFSIAEPVPPKVIKHQDMSWTVWDRWIVENNPTVRELLKWLSDKGLEAYSISYGSCLLYNTMFPRHKDRMDRKMVDLAREVAKAELPPNRRHFDVVVAC EDEEEKEVDIPQVSIYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10012507 [exp]	0	1
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10015290 [exp]	2.0	0.9328
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031186 [exp]	3.0	0.9418
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	3.5	0.9117
AT3G03570			Protein of unknown function (D...		Lus10005664 [exp]	3.5	0.9226
AT2G46900			unknown protein		Lus10010275 [exp]	4.9	0.9263
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10038816 [exp]	5.2	0.8893
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10020654 [exp]	5.3	0.8882
AT3G07660			Kinase-related protein of unkn...		Lus10036414 [exp]	5.5	0.9249
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10037145 [exp]	5.8	0.9006
AT4G15080			DHHC-type zinc finger family p...		Lus10027339 [exp]	9.4	0.8771

Compare expression of checked genes

Lus10012507 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.