Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15520 453 / 3e-144 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT2G26910 372 / 6e-114 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT1G66950 364 / 4e-111 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 358 / 9e-109 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT3G16340 352 / 5e-107 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT2G29940 333 / 4e-100 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT4G15233 323 / 1e-96 ABCG42 ATP-binding cassette G42, ABC-2 and Plant PDR ABC-type transporter family protein (.1.2) AT1G15210 323 / 2e-96 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G59870 311 / 5e-92 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT3G53480 302 / 5e-89 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034020 [exp] 586 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 551 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 548 / 3e-180 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 539 / 4e-177 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041685 [exp] 503 / 4e-168 AT1G15520 1271 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 449 / 1e-142 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 412 / 1e-128 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041680 [exp] 404 / 7e-124 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024062 [exp] 393 / 1e-121 AT1G15520 1820 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G048900 [exp] 502 / 2e-162 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G049000 [exp] 486 / 2e-158 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 480 / 6e-154 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 474 / 6e-152 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 474 / 1e-151 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 471 / 1e-150 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 459 / 4e-146 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.018G032900 [exp] 445 / 6e-141 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 440 / 5e-139 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 432 / 5e-136 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated
Representative CDS sequence Show only first row Show all	>Lus10012508 pacid=23143843 polypeptide=Lus10012508 locus=Lus10012508.g ID=Lus10012508.BGIv1.0 annot-version=v1.0 ATGGCGATTGTTTCAATGACTGTCTTCTTGCGAACCAAGATGCCTAAAAAAAGGGTCAACGATGGAGGAATATACGTGGGTGCTCTCTTCTTAACTCTTG TTATGATCATGTTCAACGGTCTGGTTAAGCTTTCGATGACGATTGCAAAGCTTCCCGTGTTCTACAAGCATAGGAATCTCTTCTTCTACCCACCTTGGGT TTACTCCATTCCTTTATGGATCCTCAAGATTCCTGCAACCTTTGCTGAAGTAGCTGTTTGGGTCTTCTTGACTTACTATGTCATCGGGTTCGATCCTGAA TTCGGAAGCCCAAACAAGCCATTGATATGTTATAATATGTTGTTCTATTTCCGGATGGTTAAACTGTTTGTGTTGCTGGTAGCCATTAACCAGATGTCGT CGGTGCTGTTTCGAGCCATTGGTGCACTTGGAAGGGACATGATTGTAGCAAACACCTTTGGCTCGTTTGCTCAGTTCCTGTTGTTTGCATTGAGCGGTTT TGTCTTGTCACGAGAGGATGTGAAGAAATGGTGGGTTTGGGGTTACTGGGCATCACCCATGATGTATGGTCAGAATGCAATCGTAGTCAACGAATTTCTT GGAAGTAGTTGGAGCCATATTCCTCCAAACTCAACAGAATCACTAGGACTTCAAGTGTTGAAATCTCGTGGTTTCTTCACCGAACCATGTTGGTATTGGC TGGGGATCGCATCATCTTTAGGATTCCTCGTCCTATTCCACATCATGTTTTCTTCGGCTCTTACTTTCTTGGGCGTTATATCTGAAGACTCTAATGAAGC TACCGCATTCGAGATGTCACAACATACAACTGCGGGATCGGAAGATGTTAAGAAGGGAATGGTTCTTCCGTTTGAGCCTCATTCGATCACCTTCAACAAC GCTACATACTCGGTTGACATGCCACATGAAATGAACTCTCAAGGTGTTGCTAAGGAAAAATTGATCCTTCTCAAGGGCGTTAGTGGTGCGTTCAGGCCGG CTGTTTTGACCGCTCTTATGGGAGTTAGTGGTGCCGGAAAAACAACACTTATGGATGCTCTTGTCGGAAGGAAAACCGGTGGATACATTGAAGGAGATAT AACAGTTTCAGGAACACTGTGGATACCGGTAGAGCCGTTGTTTGTACCATCCACCAGCCTAGTATTGATATCTTCTAAGCATGATGAGTTGTTACAGTGG AAGAGAGGAGGACAAGAGATATACGTGGGTCCACTGGGGCGCCATTCCATAGATCTGATCAACTACTTCGAGGAAACCGACGGAGTCTGGAAGATCACAA ACGGGTATAATCCAACAACTTGGATGTTGGAAGTAACAACCACAATGAGAGAACTAGTGACGGGAGTTGATTTCGCCGAGATTTACAAAAACTCTGATCT CTACCAGAGAAACAAGGCATTGATTCAGAACCTGGGCAAAGCATCGCCACCATCCAAAGAGCTCCACTTTGCAACACAATACTCACAATCATTCTTCACA CAGTGCAAGGCTTTTCTGTGGAAGCAACACTGGTCGTACTGGCGAAACCCGAAGTATACCGCCATCAGATTCCTGTTCACAACTTTCATAGGCATTATGT TCGGAACCATCTTCTGGGATCTTGGTGGCAAACGATCGAGACAACAAGACTTGTTCAACGCGTTTGGATCGTTGTTCGCATCGGTGCTGTTCATCGGAGT GCAAAATGCTTCAGCAGTACAGCCAGTTGTTGCCATTGAAAGAACTTCTTTTACCGCGAACGTGCTGCAAGAATGTATTCAGCAATGCCTTATGCTTATG CTCAGTCGCAATCACCCTGAAACCACAACATTGCCACCATCATCTCTTCCTTCTTTTACAACTTCTGGACCATCTTCTCCTGTTTCATGA
AA sequence Show only first row Show all	>Lus10012508 pacid=23143843 polypeptide=Lus10012508 locus=Lus10012508.g ID=Lus10012508.BGIv1.0 annot-version=v1.0 MAIVSMTVFLRTKMPKKRVNDGGIYVGALFLTLVMIMFNGLVKLSMTIAKLPVFYKHRNLFFYPPWVYSIPLWILKIPATFAEVAVWVFLTYYVIGFDPE FGSPNKPLICYNMLFYFRMVKLFVLLVAINQMSSVLFRAIGALGRDMIVANTFGSFAQFLLFALSGFVLSREDVKKWWVWGYWASPMMYGQNAIVVNEFL GSSWSHIPPNSTESLGLQVLKSRGFFTEPCWYWLGIASSLGFLVLFHIMFSSALTFLGVISEDSNEATAFEMSQHTTAGSEDVKKGMVLPFEPHSITFNN ATYSVDMPHEMNSQGVAKEKLILLKGVSGAFRPAVLTALMGVSGAGKTTLMDALVGRKTGGYIEGDITVSGTLWIPVEPLFVPSTSLVLISSKHDELLQW KRGGQEIYVGPLGRHSIDLINYFEETDGVWKITNGYNPTTWMLEVTTTMRELVTGVDFAEIYKNSDLYQRNKALIQNLGKASPPSKELHFATQYSQSFFT QCKAFLWKQHWSYWRNPKYTAIRFLFTTFIGIMFGTIFWDLGGKRSRQQDLFNAFGSLFASVLFIGVQNASAVQPVVAIERTSFTANVLQECIQQCLMLM LSRNHPETTTLPPSSLPSFTTSGPSSPVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10012508 [exp]	0	1
AT5G27750			F-box/FBD-like domains contain...		Lus10004848 [exp]	2.6	0.7159
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10042334 [exp]	6.5	0.7730
AT5G59190			subtilase family protein (.1)		Lus10040251 [exp]	6.9	0.7547
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10036660 [exp]	8.9	0.7024
					Lus10034814 [exp]	8.9	0.7475
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10019185 [exp]	9.5	0.7168
AT1G25275			unknown protein		Lus10004192 [exp]	14.1	0.7052
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006184 [exp]	14.1	0.6642
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032747 [exp]	17.1	0.7570
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10008198 [exp]	30.3	0.6375

Compare expression of checked genes

Lus10012508 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.