Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01550 523 / 1e-178 LECRKA4.2 lectin receptor kinase a4.1 (.1) AT3G08870 492 / 2e-166 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 466 / 2e-156 RLK receptor lectin kinase (.1) AT3G53810 449 / 5e-150 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 438 / 1e-145 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 423 / 6e-140 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70130 412 / 7e-136 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60280 400 / 3e-131 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 399 / 1e-130 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60320 398 / 3e-130 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022662 [exp] 1066 / 0 AT5G01550 651 / 0.0 lectin receptor kinase a4.1 (.1) Lus10016507 [exp] 501 / 7e-170 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 494 / 4e-167 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 488 / 5e-165 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 484 / 2e-163 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 476 / 1e-160 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 471 / 8e-159 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10040276 [exp] 469 / 9e-158 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 462 / 7e-155 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G103200 [exp] 625 / 0 AT3G08870 644 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G123300 [exp] 606 / 0 AT5G01550 629 / 0.0 lectin receptor kinase a4.1 (.1) Potri.016G122650 [exp] 588 / 0 AT5G01550 576 / 0.0 lectin receptor kinase a4.1 (.1) Potri.009G036500 [exp] 479 / 2e-161 AT5G60280 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035500 [exp] 478 / 3e-161 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 476 / 1e-160 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 470 / 2e-158 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G244000 [exp] 468 / 4e-157 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G035701 [exp] 457 / 3e-154 AT3G53810 585 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036100 [exp] 459 / 1e-153 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10012509 pacid=23143804 polypeptide=Lus10012509 locus=Lus10012509.g ID=Lus10012509.BGIv1.0 annot-version=v1.0 ATGGCGGCAGAACCTAATAAGAATCTCTTCTTGCTCTGCCTTGTCATCTTCATCACCATCTTGGCTACAACAACAGCTCAACCCTCCGATGGTGCTCAAT TCACCTTCAACGGATTCAACGGCTCCGACGGCGACATCCTCCTCGACAGCGGCGGGACTTCAATTTTGAAACCCAGCGGCGCCTTACGACTCACCTCCAC CGCCAACAAACACGCCATAGGCCGCGCTTTCCACAGACGACCAATTCAATTCCCAAGCGCTACGGCTACTTCCTTCAGCACAACTTTCGTCTTCGCCATC ACACCTCCTGCTTCCGGCAAAGGCGGATTCGGCTTGGCCTTCGTTCTCTCCGCCGCTACGGAATTCCCCGGCGCCGCCGCCGACCACTACCTCGGCCTCT TCAACTCCAACAGTGACGCCGACCCGTCCAACCAGATCTTTGCCGTCGAGTTCGACACCGTCAACGGTGTCAACGACCCCGTCGACACCGACGGGAACCA CGTCGGGATAAACGTAAACAGTATGGACTCCAACGCGACCAAACCTGCTTCCTATATCGACGAGAATGGCCGAGATCAGGAAGTGGTCCTACAGAGTGGG GATCCGATTCAAGCCTGGGTAGAATACGACGCCGTTTCGAAATCCGTCAACGTAACCCTCTCCCCAGCCGGGAAACAGAAGCCAACCTCCCCTCTCCTCA ATTTCGCCATAGATCTGACGACGATTGTAAAGGAGACTATGTACGTCGGCTTCTCTGCTTCAACAGGGGACAAAGCCAGCTCGCATTACATCCTCGGATG GAGCTTCGGAAATCCAGCTCCGCCACTCAATTCCACCCAGCTCCCACCCACGCCGGCGTCGGAGGGGGAGAATCCGAAATTCAAGCCGTCGACCGCGGGA GGAGCCAGCGACAGCGAGATTATCGGTATCGGCGGGTTCGGATCCGTCTACAGAGCGACATTCCCCAATTCCGACATCCTCCTCGCCGTAAAGAAGATAA CGCGGAACTCGATCCAAGGGATTCGCGAGTTCGCGGCGGAGATCGAGAGCCTGGGGAGGCTACGGCACAAGAATCTGGTGAATCTACAAGGATGGTGCAA GCACAAGAACGATCTGTTGCTAATTTACGATTATATCCCCAACGGCAGCCTGGATTTCTTCCTGTACCGGAGGCCAAACGGCGTCATTTTGCTCTGGGAG CAGAGGTTCAAAATCGTGAAAGGAATCGCGGCGGGATTGTTGTACCTCCACGAGGAATGGGAGCAGGTGGTGATCCACCGGGACGTGAAATCGAGCAATG TGTTGATCGACGGGGAGATGAATGGACGGTTGGGGGATTACGGACGGTTGGGGGATTTTGGATTGGCCAGGCTGTACGATCACGGTACGGCGTCGTATAC GACGAATGTGGTCGGGACGGTCGGGTACATCGCGCCCGAGATGGCCCGAACCGGGAAGGCATCGACCCGGTCGGATGTGTTTGCATTCGGGGTGCTTTTG TTGGAGATTGTGACGGGGAGGAGGCCGATCGACGGGGAATGTTTCATATTGGTGGATTGGGTGATGGAGACGTTGCGAATCGAGGATGTTCTCGAGGTGG TGGATTCGAAATTGGGCGGTGGGTACGCGGCGGAGGAGGTGAAGATGGTTTTGGAATTGGGGTTAGTTTGTGCTCATCCGAAGCAGGAGTGTAGGCCGAC GATGAGGCAGGTGGTGAGGTATCTGGACGGCGAGGAGGAGATTCCGGTCGTGGATAAGGATGGATACGGCGACGTTTTGGGGAGCACAAGGAGGATGAAT TTTAGGCTGATGGGAGTGATTAATGGTAATCATAATAGTAAGGAGATTAATGGTGGAGTGTCTGATTTTTACAGCTCTTCTTCCATTGGTGGTGCTTCTG TAAATTCTATCTATGATGGTAGATAG
AA sequence Show only first row Show all	>Lus10012509 pacid=23143804 polypeptide=Lus10012509 locus=Lus10012509.g ID=Lus10012509.BGIv1.0 annot-version=v1.0 MAAEPNKNLFLLCLVIFITILATTTAQPSDGAQFTFNGFNGSDGDILLDSGGTSILKPSGALRLTSTANKHAIGRAFHRRPIQFPSATATSFSTTFVFAI TPPASGKGGFGLAFVLSAATEFPGAAADHYLGLFNSNSDADPSNQIFAVEFDTVNGVNDPVDTDGNHVGINVNSMDSNATKPASYIDENGRDQEVVLQSG DPIQAWVEYDAVSKSVNVTLSPAGKQKPTSPLLNFAIDLTTIVKETMYVGFSASTGDKASSHYILGWSFGNPAPPLNSTQLPPTPASEGENPKFKPSTAG GASDSEIIGIGGFGSVYRATFPNSDILLAVKKITRNSIQGIREFAAEIESLGRLRHKNLVNLQGWCKHKNDLLLIYDYIPNGSLDFFLYRRPNGVILLWE QRFKIVKGIAAGLLYLHEEWEQVVIHRDVKSSNVLIDGEMNGRLGDYGRLGDFGLARLYDHGTASYTTNVVGTVGYIAPEMARTGKASTRSDVFAFGVLL LEIVTGRRPIDGECFILVDWVMETLRIEDVLEVVDSKLGGGYAAEEVKMVLELGLVCAHPKQECRPTMRQVVRYLDGEEEIPVVDKDGYGDVLGSTRRMN FRLMGVINGNHNSKEINGGVSDFYSSSSIGGASVNSIYDGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08870			Concanavalin A-like lectin pro...		Lus10012509 [exp]	0	1
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10001898 [exp]	2.6	0.8613
AT4G03230			S-locus lectin protein kinase ...		Lus10031591 [exp]	3.5	0.8495
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10032184 [exp]	4.2	0.7778
AT4G17940			Tetratricopeptide repeat (TPR)...		Lus10022877 [exp]	5.5	0.7965
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10032088 [exp]	9.2	0.8166
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Lus10022662 [exp]	12.8	0.8416
					Lus10039441 [exp]	14.0	0.8029
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10041905 [exp]	14.5	0.8107
AT5G11000			Plant protein of unknown funct...		Lus10017128 [exp]	15.2	0.8007
AT5G42440			Protein kinase superfamily pro...		Lus10015344 [exp]	21.0	0.7646

Compare expression of checked genes

Lus10012509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.