Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51770 179 / 9e-48 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT4G02680 164 / 8e-43 EOL1 ETO1-like 1 (.1) AT5G58550 141 / 4e-35 EOL2 ETO1-like 2 (.1.2) AT3G51760 75 / 1e-14 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3), Protein of unknown function (DUF688) (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022661 [exp] 457 / 4e-159 AT3G51760 79 / 6e-17 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3), Protein of unknown function (DUF688) (.4) Lus10022660 [exp] 241 / 8e-56 AT3G51770 1231 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10002206 [exp] 182 / 5e-49 AT3G51770 1089 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012238 [exp] 178 / 9e-48 AT3G51770 1092 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031859 [exp] 166 / 2e-43 AT3G51770 1088 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031289 [exp] 163 / 2e-42 AT3G51770 1083 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022084 [exp] 161 / 1e-41 AT4G02680 1267 / 0.0 ETO1-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G123800 [exp] 176 / 2e-46 AT3G51770 1415 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.006G103400 [exp] 174 / 3e-46 AT3G51770 1399 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.005G214400 [exp] 165 / 4e-43 AT4G02680 1264 / 0.0 ETO1-like 1 (.1) Potri.002G048300 [exp] 164 / 9e-43 AT4G02680 1293 / 0.0 ETO1-like 1 (.1) Potri.009G075300 [exp] 163 / 2e-42 AT3G51770 1206 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.001G280100 [exp] 159 / 6e-41 AT3G51770 1192 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.016G123700 [exp] 97 / 5e-22 AT3G51760 87 / 7e-20 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3), Protein of unknown function (DUF688) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10012510 pacid=23143833 polypeptide=Lus10012510 locus=Lus10012510.g ID=Lus10012510.BGIv1.0 annot-version=v1.0 ATGAACTCGTTGATTGCGGATCGTAAACCGTTGGAAGCTGCTTGGATGTATCAGGAGAGGGCTATTTACTGTAGCGGGAAGGAGAAGCTGTTGGATTTGG ATATGGCGACTGCATTGGATCCAAGTCTTACTTTCCCATACAGGTACAGGGCTGTTTCAATGGTGGAAGGTGGCAAACTCGAAGCTGCCGTCTCGGAACT GAACAAAGTTATCGGGTTTAACGTCTCCTCCGACTTGCTCGAGCTACGGGCTTGGATTGCGATCAGTTTGCAGGACTACGAAGGTGCTCTTAGGGATATT CGAGTTGCAAGTTGTATAACGGGAAGGGTCCCTAGCTGTAATCCACCAGATGTTGACGTTGGACTCGGAGAAAAGCTCGTTTTGGTTCCGGCAATCAATT TTGCTCTTACGCTGGATCTTGCTGCCTACTGTTACAACCAAGCACTCGTCCTCAGGCACACAAGAGCTCATCAGGGTCTGGCTCGTGTTTACAAGAAAAC AATGGATCGGAAAGCTGCATACGATGAGATGACAAAGTTGATAGAGATGGCTAGTAACAATGCCTCGGCTTACAAGAAACGAGCAGAGTATTGTTACATT GACATGGCGAAGAGGGATCTCGCCATGACAACGCAGCTAAATCCTTTGCGCCCTTTTCCGTACCGATACAGGGCAGCAGTTCTAATGGATGACCGCAAAG AAGCTGAAGCAATAGCAGAGCTGTCGAAGGCTATAACGTTCAAGCCAGACGCGGGGTTGCTGTGCAATCGAGCGGCATTTTCGGATCGACGGGGAACATC ACCTCGACGCTTCGAGACTGTCAAGCAGCGCTATGTTTCGATCCTTCCCACGGGGATACGATGGAGGCGCCGGTGCAACGACTACGTCGTTTTGGAAGAG CGGTCTTGTACTACTCCGGCCACTAACTCCATCAACCTTCCGCAAAGATCGCACGACCACCTCCACCGTGTTCCGTTTTGTTGGGAACGAGCTCCGGGGA AGCCTAAGCGGCCGCCGGAGGATGTCGGAGCTGACGAGGGCACTCCCCGTCTTAGGCTCCCGCCTTGCCGGTGGAATCCGAAAGCAGACGAGGAGAACGA CGCCGTTTTGGGGCGTGATGTTGATGATGCATGTAAACCTTGCCCGGTCTTATCAGGCCACAAGGACGAAGATGGTTGTGACGCTGACGTGGATGATGAC CTGGACGATTATTACTCCAACGCGTACATGGACGCCCTATCCCTAACGGAAGCGATCGACATCGCGCAGAGAGGCGACAGGAAAGGAGTCGATGGCGGCG GAGGAACGTCCTTCGGCCGGAAGTTGGACGGAGAGAGAAACAACTACAACGACGCCGGCGGCGAGTATCCGAATTTCATGATGGAGAGGTTCCTGCCGGA CGCGACAGCGTTGGCGGCGGCGTCCTCCATGTTTTGCGCCACCCACAAGATGATGACACCGTTAGGATCGCCGCCGCAGCCTCCGAATGGCTATTACTCG CCGGAGAAGTCGACGGCGGCGTCTGCGCAGAAAGGTTGTGGGTTTGATGCTCTGTTCCCGTGGCGGGGGATGAATAAGCACAAGCTGTGTAATGCGAAGA ATGCTGAACGACAAGTCGTTGTGGCCAGCGTCTCTGGACAGCTGCCAGCTCAACGGCGGAGTGATGCTAAGGATACCAAACGGCGTCGTAACTTCGATAA GGAGTGTTTGGGGAAGTAG
AA sequence Show only first row Show all	>Lus10012510 pacid=23143833 polypeptide=Lus10012510 locus=Lus10012510.g ID=Lus10012510.BGIv1.0 annot-version=v1.0 MNSLIADRKPLEAAWMYQERAIYCSGKEKLLDLDMATALDPSLTFPYRYRAVSMVEGGKLEAAVSELNKVIGFNVSSDLLELRAWIAISLQDYEGALRDI RVASCITGRVPSCNPPDVDVGLGEKLVLVPAINFALTLDLAAYCYNQALVLRHTRAHQGLARVYKKTMDRKAAYDEMTKLIEMASNNASAYKKRAEYCYI DMAKRDLAMTTQLNPLRPFPYRYRAAVLMDDRKEAEAIAELSKAITFKPDAGLLCNRAAFSDRRGTSPRRFETVKQRYVSILPTGIRWRRRCNDYVVLEE RSCTTPATNSINLPQRSHDHLHRVPFCWERAPGKPKRPPEDVGADEGTPRLRLPPCRWNPKADEENDAVLGRDVDDACKPCPVLSGHKDEDGCDADVDDD LDDYYSNAYMDALSLTEAIDIAQRGDRKGVDGGGGTSFGRKLDGERNNYNDAGGEYPNFMMERFLPDATALAAASSMFCATHKMMTPLGSPPQPPNGYYS PEKSTAASAQKGCGFDALFPWRGMNKHKLCNAKNAERQVVVASVSGQLPAQRRSDAKDTKRRRNFDKECLGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012510 [exp]	0	1
AT3G51760			Protein of unknown function (D...		Lus10022661 [exp]	1.0	0.8522
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10008419 [exp]	5.7	0.7776
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10006146 [exp]	7.3	0.7964
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10023208 [exp]	8.7	0.7496
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10038894 [exp]	10.8	0.7211
					Lus10017461 [exp]	11.7	0.7275
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10039906 [exp]	12.0	0.7401
AT4G14480			Protein kinase superfamily pro...		Lus10021882 [exp]	18.4	0.7423
					Lus10038720 [exp]	20.2	0.7158
AT5G18430			GDSL-like Lipase/Acylhydrolase...		Lus10004774 [exp]	21.5	0.7335

Compare expression of checked genes

Lus10012510 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.