Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64050 864 / 0 ATERS, ERS, OVA3 OVULE ABORTION 3, glutamate tRNA synthetase (.1) AT5G26710 65 / 8e-11 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) AT1G25350 49 / 9e-06 OVA9 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022659 [exp] 1148 / 0 AT5G64050 892 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Lus10026044 [exp] 67 / 2e-11 AT5G26710 1080 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10014335 [exp] 64 / 3e-10 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Lus10034339 [exp] 47 / 5e-05 AT1G25350 1290 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Lus10041433 [exp] 46 / 0.0001 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G169700 [exp] 891 / 0 AT5G64050 922 / 0.0 OVULE ABORTION 3, glutamate tRNA synthetase (.1) Potri.005G001200 [exp] 68 / 1e-11 AT5G26710 1116 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.013G000400 [exp] 67 / 3e-11 AT5G26710 1071 / 0.0 Glutamyl/glutaminyl-tRNA synthetase, class Ic (.1) Potri.010G122866 [exp] 50 / 4e-06 AT1G25350 558 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2) Potri.008G122200 [exp] 49 / 1e-05 AT1G25350 1291 / 0.0 ovule abortion 9, glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00749 [flax] [poplar] tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10012512 pacid=23143904 polypeptide=Lus10012512 locus=Lus10012512.g ID=Lus10012512.BGIv1.0 annot-version=v1.0 ATGGCCAGGTCAATGGCAGCAGCTACAGCTACAGGAACAGCTCCATGGATGATGAGGGCCACAAGGAGCATAATAACCCCTTCTTTCCGCAACCTACCTC ACTATCCCACTGTCCAATCACATCAATTTCCCATTTTAGAAAAAACCCTCCGATTCACTTCCTTTGCCACTTCCCCTTCTAGAACCTTCTCCGTCTCAGC CGCTTCCGAATCCACCGGCGGCGAAAAACAGCAGCAAGTCCGAGTTCGTTTCGCTCCTTCCCCAACTGGGAATCTTCACGTCGGTGGTGCTCGAACTGCT CTGTTTAATTATCTCTTCGCGAGGGCAAATGGCGGCAAATTTGTGCTGAGGATTGAAGACACTGACTTGGAGAGGTCAACTAGAGAGTCTGAAGAGGCCG TGCTTAGAGATCTTTCCTGGCTTGCTCTTGATTGGGATGAAGGTCCTGGAATGGGTGGAGATTATGGCCCCTATCGGCAATCTGAAAGGAATGCTCTTTA TAAACAACACGCTGACAAACTCATCGAGTCCGGTCATGTTTACCGCTGCTTCTGTTCCAACGAGGAACTTGAGAAAATGAAGGAGATAGCAAAACTGAAG CAACTGCCTCCTGTGTACACCGGAAAATGGGCAACTGCAACGGATGATGAAGTAATGCAGGAGATGGAAAAGGGTACCCCTTTTACATATCGTTTTCGTG TTCCAAAGCAGGGGAGACTGAAAATTAATGATCTCATTCGGGGTGAAGTTAGTTGGAATCTTGACACGCTGGGAGATTTTGTGATCATGAGGAGCAATGG ACAACCTGTTTACAACTTCTGTGTCACAGTAGATGATGCCGCTATGGCCATCTCACATGTTATTAGGGCCGAAGAGCATTTGCCAAATACACTGAGGCAA GCATTAATATATCAGGCTCTTGGATTACCGATGCCTCAGTTTGCACACGTGTCTCTGATTCTTGCACCCGATCGAAGCAAGCTATCAAAAAGGCACGGTG CTACTTCAGTGGGTCAGTTCAGGGAGATGGGCTACCTGCCCCAAGGAATGGTAAATTACCTAGCCCTCTTAGGCTGGGGTGATGGCACTGAAAATGAATT TTTCACCCTTGAACAACTAGTTGAAAAGTTCACAATCGACCGTGTTAACAAAAGTGGCGCGGTGTTTGATTCAACTAAGTTGAGATGGATGAATGGTCAG CATTTAAGAGCACTTCCGTCCGAGAAGCTGAAGAAGCTCATAGGTGAACGCTGGAAGGACACTGGTATCCTTATGGAGTCAGAGGGACCTTTTGTAGAGG AGGCTTTTGAGCTGCTGAAGGATGCGATAGATTTGGTAACTGATGCAGACAAAGTAATGCTGAATCTCTTGTCATATCCTTTACAAGAGACTTTAACGAG CCCTGAAGGGAAGGCAGTAGTAGAAGACAAACTCTCTGAAGTTTCATCAAGCCTGTTGTCAGCATATGACAGCGGGGAACTTGGTACTGCACTGGAAGGA GGTCATTCAGGATGGAAGAAGTGGGTGAAGGACTTTGGAAAATCCACAAAGCGCAAGGGGAAATCTTTGTTCATGCCACTACGAGTGCTGCTAACAGGGA AGCTGCATGGTCCTGATATGGGTGGGAGTATGGTGTTGCTTCATAGAGCTGGAGTTGAAGGTATAGTTGGTCGTGAAGTAGGGTTCTTGAGATTGGAAGA GAGATTTAGACAGTTGAGGGAAGTGAACTGGGATGCAATTTCATCGAGCAACTGTGAAGGTGCTGTAGAGTCAGCTGCTGGTGTTTCCAACTGA
AA sequence Show only first row Show all	>Lus10012512 pacid=23143904 polypeptide=Lus10012512 locus=Lus10012512.g ID=Lus10012512.BGIv1.0 annot-version=v1.0 MARSMAAATATGTAPWMMRATRSIITPSFRNLPHYPTVQSHQFPILEKTLRFTSFATSPSRTFSVSAASESTGGEKQQQVRVRFAPSPTGNLHVGGARTA LFNYLFARANGGKFVLRIEDTDLERSTRESEEAVLRDLSWLALDWDEGPGMGGDYGPYRQSERNALYKQHADKLIESGHVYRCFCSNEELEKMKEIAKLK QLPPVYTGKWATATDDEVMQEMEKGTPFTYRFRVPKQGRLKINDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDAAMAISHVIRAEEHLPNTLRQ ALIYQALGLPMPQFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPQGMVNYLALLGWGDGTENEFFTLEQLVEKFTIDRVNKSGAVFDSTKLRWMNGQ HLRALPSEKLKKLIGERWKDTGILMESEGPFVEEAFELLKDAIDLVTDADKVMLNLLSYPLQETLTSPEGKAVVEDKLSEVSSSLLSAYDSGELGTALEG GHSGWKKWVKDFGKSTKRKGKSLFMPLRVLLTGKLHGPDMGGSMVLLHRAGVEGIVGREVGFLRLEERFRQLREVNWDAISSSNCEGAVESAAGVSN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10012512 [exp]	0	1
AT1G79050			recA DNA recombination family ...		Lus10026204 [exp]	1.4	0.8788
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10027506 [exp]	2.4	0.8635
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	3.0	0.8711
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	3.2	0.8672
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10040477 [exp]	4.2	0.8766
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10008580 [exp]	7.5	0.8548
AT3G23020			Tetratricopeptide repeat (TPR)...		Lus10021891 [exp]	10.9	0.7920
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	11.7	0.8367
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10010321 [exp]	12.2	0.8591
AT4G37920			unknown protein		Lus10029560 [exp]	12.4	0.8248

Compare expression of checked genes

Lus10012512 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.