Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04380 412 / 4e-141 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT1G04050 347 / 1e-112 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT5G43990 344 / 1e-111 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT5G04940 120 / 6e-29 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT2G23740 120 / 6e-29 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT1G73100 119 / 1e-28 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT5G13960 110 / 1e-25 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G22740 107 / 2e-24 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 105 / 5e-24 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT3G03750 100 / 4e-23 SUVR3, SDG20 SET domain protein 20 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022657 [exp] 650 / 0 AT3G04380 412 / 2e-142 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10005476 [exp] 396 / 2e-134 AT3G04380 503 / 3e-176 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10024946 [exp] 355 / 5e-115 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10022879 [exp] 329 / 1e-104 AT5G43990 455 / 2e-149 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10027956 [exp] 195 / 7e-61 AT3G04380 226 / 3e-73 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10008198 [exp] 169 / 5e-50 AT3G04380 217 / 8e-69 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022658 [exp] 114 / 3e-29 ND / Lus10040150 [exp] 118 / 4e-28 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10022483 [exp] 116 / 2e-27 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G138600 [exp] 519 / 0 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.013G048100 [exp] 421 / 7e-142 AT3G04380 471 / 5e-161 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.014G192500 [exp] 401 / 6e-132 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.002G257400 [exp] 400 / 9e-132 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.005G129800 [exp] 129 / 6e-32 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.007G033000 [exp] 129 / 1e-31 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.001G036800 [exp] 117 / 6e-28 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 116 / 1e-27 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G162801 [exp] 112 / 3e-26 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G083100 [exp] 110 / 8e-26 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10012513 pacid=23143854 polypeptide=Lus10012513 locus=Lus10012513.g ID=Lus10012513.BGIv1.0 annot-version=v1.0 ATGTCGGCGCAATACGATCGTCGTGGTAATCAGAACTCTACGTCTCCTTCGGAGAAATCAAAACCACAGCCTCGAAACACTGCACCAGGCTCGTTTCTAG CGAATATTCGCCAAATTGCTGATCACAATTCTAGCCACGAAAATGGCAGTCGCAACTTTTACCACGGAGATCAATGCATCGATCTAGTAGACGACGACGA GGTACATTCTATTGGTCATAACAGTACAAAGAAGACGAAATCTCCAGCGTTGATGTCATCAGAGTCTGATAGCCCATCCTCGTCCCCACCAATGGCCGGA CAAGAACAAGAACGAGAAGAAGTGAGCTCAAACAAGTATCCAGTCTACAAAAGGGACATATCAAGAGGCCAAGAAAGAGTCAAACTCCCGCTGGTCAACA GCAGCAATCTGATGATCAAGCCACCAAACATCTTATACATCAGCACCAACATGGTCCACAAGGACGCCCACGTGGACTTCTCCGTATCTCGAATATCCGA CGAGGACTGCTGCTCGAGCTGCCTCGGCGACTGCCTGGCATCAGAGCTCCCCTGCTGGTGTGCTTCGGAGACGGGCGGGGAGTTTGCATACACTCCAGAA GGGTTGCTGAAGGCAGAGTTTCTGGATAAGTGTGTGGCGATGAACAAGTCGCCTGAGACGAAGCATTACTATTACTGTGAGAAGGTTTGTCCTTTGAGTA ATGATTTGAGCAAGAAGGGGAAGAGGGTTAAGGCTTGTAAGGGGCATTTGAGTAGGAAGTTCATCAAGGAGTGCTGGATCAAGTGTGGGTGTAGTAAGAG GTGTGGGAATCGGGTCGTCCAGAAAGGGATTCGTGTCCTTCTGCAGGTGTTTGCAACCTCGGCAGAGAAAGGGTGGGGAGTAAGATCAACGACGGCACTA AAGAAGGGAACATTCATCTGCGAGTACATCGGCGAGATCGTGACGAATCAGGAGCTCTACGAGAGGAACAAGGAAAGAGCGGCCAAGAACGAAGTGCACA CTTATCCAGTGCTGCTTGATGCTGACTGGGGATCCGAGAGGATCCTCAAGGACGAGGAGGCTCTCTGCTTGGACGCTACCGAGTTCGGGAATGTCGGCAG GTTCATCAATCACAGATGTGAAGATGCTAATCTGATTGAGATACCGGTGGAGGTGGAATCACCGGATCATCATTACTACCACGTAGCCTTTTTCACGGTG AGAGATGTGGAAGCAATGGAAGAACTAACATGGGATTATGGGATTGAATTTGACGACATATACCATCCTATCAAAGCATTCAAGTGCAAATGTGGGAGCA AACTTTGTCGAGATAAGAACAGAGCCTCGCCACAATCACTCTCAAGAAACTAA
AA sequence Show only first row Show all	>Lus10012513 pacid=23143854 polypeptide=Lus10012513 locus=Lus10012513.g ID=Lus10012513.BGIv1.0 annot-version=v1.0 MSAQYDRRGNQNSTSPSEKSKPQPRNTAPGSFLANIRQIADHNSSHENGSRNFYHGDQCIDLVDDDEVHSIGHNSTKKTKSPALMSSESDSPSSSPPMAG QEQEREEVSSNKYPVYKRDISRGQERVKLPLVNSSNLMIKPPNILYISTNMVHKDAHVDFSVSRISDEDCCSSCLGDCLASELPCWCASETGGEFAYTPE GLLKAEFLDKCVAMNKSPETKHYYYCEKVCPLSNDLSKKGKRVKACKGHLSRKFIKECWIKCGCSKRCGNRVVQKGIRVLLQVFATSAEKGWGVRSTTAL KKGTFICEYIGEIVTNQELYERNKERAAKNEVHTYPVLLDADWGSERILKDEEALCLDATEFGNVGRFINHRCEDANLIEIPVEVESPDHHYYHVAFFTV RDVEAMEELTWDYGIEFDDIYHPIKAFKCKCGSKLCRDKNRASPQSLSRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10012513 [exp]	0	1
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10001172 [exp]	4.5	0.9119
AT4G40030			Histone superfamily protein (....		Lus10013946 [exp]	11.9	0.8975
AT3G20260			Protein of unknown function (D...		Lus10033354 [exp]	13.3	0.9039
AT3G50620			P-loop containing nucleoside t...		Lus10009348 [exp]	14.4	0.8702
AT3G53730			Histone superfamily protein (....		Lus10023331 [exp]	15.4	0.8909
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10009538 [exp]	17.7	0.8726
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10002168 [exp]	20.8	0.8687
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019870 [exp]	22.3	0.8890
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10004455 [exp]	23.2	0.8600
AT3G27360			Histone superfamily protein (....		Lus10031252 [exp]	24.0	0.8782

Compare expression of checked genes

Lus10012513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.