Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62260 690 / 0 MEF9 mitochondrial editing factor 9 (.1) AT4G02750 491 / 5e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 420 / 3e-139 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G56690 405 / 1e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G35030 379 / 2e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G32415 355 / 2e-113 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G53600 342 / 6e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77010 340 / 1e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16835 334 / 1e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 335 / 2e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013540 [exp] 453 / 3e-151 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 411 / 8e-136 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030549 [exp] 409 / 2e-134 AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012897 [exp] 397 / 4e-131 AT4G02750 469 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003857 [exp] 349 / 2e-112 AT4G02750 404 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012971 [exp] 340 / 3e-108 AT1G68930 487 / 5e-163 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10010998 [exp] 335 / 3e-106 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 333 / 3e-105 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 325 / 6e-102 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139200 [exp] 764 / 0 AT1G62260 749 / 0.0 mitochondrial editing factor 9 (.1) Potri.012G048800 [exp] 474 / 3e-159 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G019900 [exp] 446 / 1e-148 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G038400 [exp] 415 / 4e-138 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G006400 [exp] 415 / 3e-137 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 414 / 9e-137 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G087300 [exp] 374 / 7e-121 AT1G32415 851 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G140400 [exp] 342 / 8e-111 AT3G29230 398 / 2e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G081700 [exp] 336 / 7e-107 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 330 / 2e-106 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012514 pacid=23143892 polypeptide=Lus10012514 locus=Lus10012514.g ID=Lus10012514.BGIv1.0 annot-version=v1.0 ATGCCCGAGAGAAACGTGGTGTCGTGGAACTCGATGGTGAGCGGATACGCGAAGAGAGGGGAAATGACCAAAGCAGGTCAACTGTTCGACTTAATGCCAG AGAGAGATGTAGTATCATGGAACACGATGATTTCCGGTTATGTTTCGTGTAGGCTTCTTGCAGAAGCGAGGCGGGTTTTCGACCGTATGCCGAGGAAAGA TTGTGTCTCGTGGAACACGATGATCAGCGGGTATGCAAAGAACAGGAGGATGGATGATGCACTTCACCTGTTCGACGAAATGCCTGAACGAGATGTCGTC TCGTGGAATGCAGTGGTTACTGGGTTCTTACAAAACGGGGAGGTTTTGAAAGCGATCGAGTTCTTTAATCAGATTCCTGAGAGGAATTCTTCATCTGTGA ACGCAATTGTGGCCGGTCTTGTACAGAATGGCGAGCTTGATGCAGCTGGAAGAGTACTTGGTGATTTCGAGGACTATGATCTTGTTCATGGATATAATAC ATTGATTGCAGGCTATGCTCAGAGAGGGAAAGTTGACGAAGCTCGTATACTCTTCGATCGAATTCGGAGGAACACGGTATCATGGAACACAATGCTGATG TGCTATGTTAAAGCCAAAGATGTCGTTGCCGCTCGAAAACTCTTCGATCAGATTCCGGATCGAGATAATTTCTCGTGGAATACGATGATCAGCGGCTACG TTCAGGAAAAAAACATTGAACAGGCATCTGCACTGTTCGTTGAAATCCCCAACCCGGATATCCCTTCATGGAACTCGATGATCTCCGGCCATTCTGAGGC AGGAAACTCGGATCTTGCTCGCGAATTCTTCGACAAGATGCCTCGGAAGAGCCTCGTATCGTGGAATTCCATGATCTCCGGATACGAAAAGAACGAGGAT TACGAAGGAGCTGTTAACCTCTTCAATCGGATGCGATCTGAGTGCGAAAAGGCAGATCGACATACGTTATCTTCGATCCTTAGTGTGTCGTCTGGCATAC CAAATCTCCGGTACGGTATGCAGATCCATCAGCTTATCTCGAAAACTGTCGTCCCCGATGTCACGATTCACAACGCCTTGATCACCATGTATTCTAAATG TGGAGCGATCTCCGATGCACGAACGGTCTTCGAGGAGGTGAAATTCGCGAGGGACGTCGTTTCGTGGAACGCGATGATCGGCGGTTATGCATCTCACGGC CATGCTTCTGAAGCCTTGCGAGTTTTCGAAACCATGAAGGTGTTTAAAGTGCAGCCTACTGATATAACATTCATTGCAGCTATGAATGCTTGCGCCCATG CCGGATTAATCGAGGACGGTCGAAGGATATTCGAGTCGATCGTGGCTGATTACGGTATGATTCCGAGAACTGAGCATTTCGCTTCGTTGGTTGACGTAAT TTGCAGGGGTGGACAACTTCAGGAAGCCTTGGAGTTGATCAGAGGCATGCCGTTCGAACCGGATAAGGCAATTTGGGGTGCGTTGCTCGAGGGTTCGAGG GTGCATTATGACGTGAAGATGGCTCGAATTGCTGCTGATTCGTTGGCTAGGCTCGAACCGAGTGGATCTGCGGCGTATGTGTTGCTTCATAATATGTATG CTGATTTGGGGCTGTGGGATGAAGCTAGTGAAGTTAGGCTGGTAATGGAGAAGTGTAATGTCAAGAAAGAAGCTGCTCATAGCTGGGTTGACTCAGTTCG ATTGACAATGGATTAA
AA sequence Show only first row Show all	>Lus10012514 pacid=23143892 polypeptide=Lus10012514 locus=Lus10012514.g ID=Lus10012514.BGIv1.0 annot-version=v1.0 MPERNVVSWNSMVSGYAKRGEMTKAGQLFDLMPERDVVSWNTMISGYVSCRLLAEARRVFDRMPRKDCVSWNTMISGYAKNRRMDDALHLFDEMPERDVV SWNAVVTGFLQNGEVLKAIEFFNQIPERNSSSVNAIVAGLVQNGELDAAGRVLGDFEDYDLVHGYNTLIAGYAQRGKVDEARILFDRIRRNTVSWNTMLM CYVKAKDVVAARKLFDQIPDRDNFSWNTMISGYVQEKNIEQASALFVEIPNPDIPSWNSMISGHSEAGNSDLAREFFDKMPRKSLVSWNSMISGYEKNED YEGAVNLFNRMRSECEKADRHTLSSILSVSSGIPNLRYGMQIHQLISKTVVPDVTIHNALITMYSKCGAISDARTVFEEVKFARDVVSWNAMIGGYASHG HASEALRVFETMKVFKVQPTDITFIAAMNACAHAGLIEDGRRIFESIVADYGMIPRTEHFASLVDVICRGGQLQEALELIRGMPFEPDKAIWGALLEGSR VHYDVKMARIAADSLARLEPSGSAAYVLLHNMYADLGLWDEASEVRLVMEKCNVKKEAAHSWVDSVRLTMD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10012514 [exp]	0	1
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	1.4	0.9157
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	2.0	0.8878
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10004373 [exp]	4.5	0.8526
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	5.3	0.8543
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	5.5	0.8637
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10011900 [exp]	6.2	0.7752
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10000868 [exp]	7.5	0.8421
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10021053 [exp]	7.9	0.8444
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003325 [exp]	8.1	0.8485
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	10.0	0.8312

Compare expression of checked genes

Lus10012514 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.