Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78610 419 / 7e-141 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT2G17010 407 / 3e-137 Mechanosensitive ion channel family protein (.1) AT1G53470 405 / 2e-135 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT3G14810 397 / 3e-132 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT2G17000 384 / 3e-127 Mechanosensitive ion channel family protein (.1) AT5G12080 272 / 2e-85 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 253 / 2e-78 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022654 [exp] 582 / 0 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023990 [exp] 519 / 0 AT1G78610 762 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10025092 [exp] 532 / 1e-178 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10013692 [exp] 431 / 4e-152 AT1G53470 496 / 6e-170 mechanosensitive channel of small conductance-like 4 (.1) Lus10005556 [exp] 435 / 2e-150 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10038148 [exp] 437 / 4e-147 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10042499 [exp] 433 / 1e-145 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10004153 [exp] 320 / 2e-99 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10036586 [exp] 287 / 3e-91 AT5G12080 573 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G178900 [exp] 452 / 3e-153 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 427 / 1e-143 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 426 / 7e-143 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 357 / 5e-117 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.013G073000 [exp] 291 / 5e-93 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G222500 [exp] 293 / 7e-93 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G144100 [exp] 292 / 9e-93 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 285 / 2e-90 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10012515 pacid=23143855 polypeptide=Lus10012515 locus=Lus10012515.g ID=Lus10012515.BGIv1.0 annot-version=v1.0 ATGAGGATGATCATTCGAGGAAGATCAAGAGTGAGTATCAGGGCGAGGAAAATCTTCTACAACGTTGCTGCTCCTAATGCAAGGTACATATACTTGGAGG ATCTAATGAGGTTCATGAGAGAAGAAGAAGAAGCACTGAAAACTATGAGCTTCTTCGAAGGAGCATCCGAAACTAGCCGTATCTCCAAATCTTCTCTCAA GAATTGGGTCGTGAATGCCTTCAGGGAAAGGAGGGCACTAGCCTTGACGCTCAACGACACAAAGACGGCGGTCAACAAGCTCCACCAGATGGTCAACGTC ATCGTCTCCGTTATCATCGTCATCATCTCCTTGCTCCTCCTCGACATCGCTCCAACCCGACTCTTCGTCCTCCTGGGCTCGCAGATTGTCGTTGTTTCGT TCATCTTCGGCAACACCTGCAAGACCCTCTTCGAGTCCATCATCTTCTTGTTCATCGTCCATCCGTACGACGTCGGCGACCGGTGCGAGATTGGTGCCGA TGGTATTCAGCTGGTGGTGGAAGAGATGAACATATTAACAATAGTGTTTTTGAGGGGAGACAATCAAAAAGTGGTGTACCATAACAACATACTCGCCACC AAATCCATCGGAAATTACTACCGGAGTCCCGACATGGGCGACGCCATTGAGTTCCTCATCCACGTCATGACTCCCCCCGACAAGGTCTCCATCATGAAAC AACGAATCATTAGCTACATAGAAGCGAAGAAGGAGCACTGGTACCCAAGCCCAATGGTGATAACAAAGGACGTCGAAGGTCTACAGTCGATAAAAATGGC GGTCTGGTTTCGACACAGGATCAACCATCAAGACATGGGCGAAAAATTCACCCGACGAGCCACCCTGGTCGAAGAGATCATCAAGATCTTCAAAGAACTC GACATCCAGTACCGCCTCTACCCGATCGACGTCAACATTCGACAGGTTCCCCCGTTGCCACCTTTGCCCTACTCGTCGTAG
AA sequence Show only first row Show all	>Lus10012515 pacid=23143855 polypeptide=Lus10012515 locus=Lus10012515.g ID=Lus10012515.BGIv1.0 annot-version=v1.0 MRMIIRGRSRVSIRARKIFYNVAAPNARYIYLEDLMRFMREEEEALKTMSFFEGASETSRISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHQMVNV IVSVIIVIISLLLLDIAPTRLFVLLGSQIVVVSFIFGNTCKTLFESIIFLFIVHPYDVGDRCEIGADGIQLVVEEMNILTIVFLRGDNQKVVYHNNILAT KSIGNYYRSPDMGDAIEFLIHVMTPPDKVSIMKQRIISYIEAKKEHWYPSPMVITKDVEGLQSIKMAVWFRHRINHQDMGEKFTRRATLVEEIIKIFKEL DIQYRLYPIDVNIRQVPPLPPLPYSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012515 [exp]	0	1
AT1G78780			pathogenesis-related family pr...		Lus10027315 [exp]	7.9	0.6272
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012516 [exp]	12.5	0.6992
AT4G08250	GRAS		GRAS family transcription fact...		Lus10033517 [exp]	21.0	0.6345
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10041120 [exp]	21.3	0.6623
AT2G32360			Ubiquitin-like superfamily pro...		Lus10015125 [exp]	22.3	0.6692
AT3G03770			Leucine-rich repeat protein ki...		Lus10010648 [exp]	23.2	0.5952
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10042731 [exp]	37.1	0.6435
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Lus10003109 [exp]	39.1	0.6433
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023894 [exp]	45.5	0.6277
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10039946 [exp]	46.0	0.5796

Compare expression of checked genes

Lus10012515 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.