Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53470 289 / 1e-89 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT1G78610 285 / 2e-88 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT3G14810 280 / 4e-86 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT2G17000 250 / 2e-75 Mechanosensitive ion channel family protein (.1) AT2G17010 185 / 7e-52 Mechanosensitive ion channel family protein (.1) AT5G12080 166 / 3e-45 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 163 / 3e-44 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G49260 57 / 1e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022654 [exp] 572 / 0 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10025092 [exp] 339 / 2e-105 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023990 [exp] 303 / 7e-97 AT1G78610 762 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10042499 [exp] 293 / 6e-91 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10038148 [exp] 292 / 2e-90 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10000913 [exp] 228 / 1e-72 AT1G78610 106 / 7e-26 mechanosensitive channel of small conductance-like 6 (.1) Lus10005556 [exp] 200 / 2e-58 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10005631 [exp] 183 / 4e-55 AT1G78610 223 / 7e-67 mechanosensitive channel of small conductance-like 6 (.1) Lus10004153 [exp] 188 / 3e-52 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G178900 [exp] 350 / 7e-113 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 306 / 4e-96 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 301 / 7e-94 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 210 / 9e-61 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.006G222500 [exp] 185 / 6e-52 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G144100 [exp] 179 / 1e-49 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 166 / 2e-45 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 164 / 2e-44 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012516 pacid=23143848 polypeptide=Lus10012516 locus=Lus10012516.g ID=Lus10012516.BGIv1.0 annot-version=v1.0 ATGACGAAGGATTATTACGGCACCGTCGACGTCGACAAGCATCGTAGGGAGCCGAGCTTCGGATTCTCGAACCAAACCGCGGTGGAGGACGAGGAGGACC CTCCCACCAGGCTGATCCACCAGTTCCTCAGCCAGCAGAAACACGGCGATATCGCCCTCGACATGGATCTCGAAATGAACGAGCTTCAACCAAACCAACG CTCCTCCATCCGCGTCTCCTTGGACCCCTCCGTCTCCGACGCCCGCGCAGACGCGGCGGCGGCGGCGGAATCCCTCCACCGGCGGCACAACAAGGATAGT TATAACAACAACAACCCTCCTCCCCCTCCGACCGAGGCCGGAGTCATCCGATGTACATCCAACAGCTCGTTCCGGAACCGAGCGAGCTCCCTCTCCCGCC TCAAAACCAAATCCCGGCTGCTCGATCCGCCAGAGGATCGGATCGAGAGGATGTTGGGGCTGATCATGAAATCGGGGCAACTACAGAGGTCGGGGATGCT GAGTAAATCGGGGGATGAGGATGACGACGACGAGCTGGAGCTCGAGGACTTGCCGGAGGATTTCAATTCGGCGAAGATGAACATCTCCATAATTGTGCAG TGGGTGATTCTGATAGCGATCGTTGTGTCGTTAATATGCAGCTTGGTGATTCCTTCGTTGGAAAGGAAGAGGATTGTTCATCTGAGGCTGTGGAAATGGG AAGTGCTTTTGCTGGTGCTGATCTGTGGCCGTTTGGTTTCCGGGTGGGGGATCCGTATCTTGGTGTACTTGGTCGAGAGGAACTTCCTCTTGAGGAAAAG GGTCCTATACTTCGTATACGGAGTAAAGAACGCGGTCCAAAACTGCCTCTGGCTTGGACTAGTCCTCGCCGCATGGATGGTCCTGTTCGACAAGAGAGTC GAGCAGGAAGCCAAAGGGAGGGTTCAAGACCTTAAGTACTTAACCAAAGTGTGGATCTGTTGCCTGGTGGCCAACTTCATTTGGCTGCTCAAGACTCTGC TTGTCAAAGTCCTGGCCTCGTCGTTCCACGTCAGCACCTACTTCGACAGGATTCAGGAGTCGCTGTTCAACCAGTATGTGATCGAGACGCTGTCAGGCCC ACCGTTGATCGAGCAGCTGAGGATTAGGGATGATGTCGAGTGGACGGCTGCTGAGGTTGCAGAGTGCTGGGGCTCGTGTTCCGCCTGA
AA sequence Show only first row Show all	>Lus10012516 pacid=23143848 polypeptide=Lus10012516 locus=Lus10012516.g ID=Lus10012516.BGIv1.0 annot-version=v1.0 MTKDYYGTVDVDKHRREPSFGFSNQTAVEDEEDPPTRLIHQFLSQQKHGDIALDMDLEMNELQPNQRSSIRVSLDPSVSDARADAAAAAESLHRRHNKDS YNNNNPPPPPTEAGVIRCTSNSSFRNRASSLSRLKTKSRLLDPPEDRIERMLGLIMKSGQLQRSGMLSKSGDEDDDDELELEDLPEDFNSAKMNISIIVQ WVILIAIVVSLICSLVIPSLERKRIVHLRLWKWEVLLLVLICGRLVSGWGIRILVYLVERNFLLRKRVLYFVYGVKNAVQNCLWLGLVLAAWMVLFDKRV EQEAKGRVQDLKYLTKVWICCLVANFIWLLKTLLVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEQLRIRDDVEWTAAEVAECWGSCSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012516 [exp]	0	1
AT2G32360			Ubiquitin-like superfamily pro...		Lus10015125 [exp]	7.2	0.8858
AT1G47530			MATE efflux family protein (.1...		Lus10016296 [exp]	9.2	0.8659
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012515 [exp]	12.5	0.6992
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10006159 [exp]	12.8	0.6943
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10004924 [exp]	18.1	0.6964
					Lus10041024 [exp]	19.9	0.8455
					Lus10007507 [exp]	20.9	0.8404
AT1G30050			unknown protein		Lus10035609 [exp]	23.4	0.8405
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	28.5	0.8404
AT3G14880			unknown protein		Lus10013711 [exp]	31.0	0.8402

Compare expression of checked genes

Lus10012516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.