Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35780 748 / 0 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT4G38470 746 / 0 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 692 / 0 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G31170 278 / 1e-87 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 266 / 3e-83 Protein kinase superfamily protein (.1) AT1G62400 261 / 4e-82 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT5G01850 231 / 2e-70 Protein kinase superfamily protein (.1) AT5G58950 232 / 6e-69 Protein kinase superfamily protein (.1) AT5G49470 224 / 2e-66 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT5G50180 219 / 4e-66 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022653 [exp] 973 / 0 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 948 / 0 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 928 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10041845 [exp] 717 / 0 AT4G35780 791 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10004153 [exp] 596 / 0 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10005630 [exp] 498 / 6e-172 AT4G38470 514 / 8e-179 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 477 / 8e-163 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10018895 [exp] 472 / 3e-161 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10028392 [exp] 424 / 1e-144 AT4G35780 445 / 2e-153 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139400 [exp] 851 / 0 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 828 / 0 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 742 / 0 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 711 / 0 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 694 / 0 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 668 / 0 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G015400 [exp] 647 / 0 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 622 / 0 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 487 / 6e-167 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 483 / 2e-165 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10012517 pacid=23143851 polypeptide=Lus10012517 locus=Lus10012517.g ID=Lus10012517.BGIv1.0 annot-version=v1.0 ATGGTGGAGATGACCTCCACGACTGCGACGACAGTGACAGCGGAGGAGGAGGAGGATAAAAGCGAGAGCTGCGGGAGCCGTGAAGTTCACGACACGAGGT CTGTGTCTCCGTCGCCGTCGATGTCACCGCCTCCGCACGGGAGGCAGCAGAAGCAGAAGCTGGAGGTGTACAATGAAGTTCTCAGTCGGCTTCAAGGATC GGAAGAGGCCGATCGTGCTGGCTTCGACGACGAGCTCTGGTCTCACTTCAGTCGTCTTCCTGTCCGATACGCATTGGATGTGAATGTGGAAAGAGCTGAA GATGTTCTAATGCATAAGAGACTACTACATTTGGCGCACGATCCAGCTAATCGGCCGGTGATCGAAGTCCGGCTAGTACAGGTTCCTCCAAGTACTGATG GGAAGTGGGATGATTCTACTTATCCATATCATAATAGGGAAGAAACTGCCGAAAGCAGTCGACAAAGCATACATCCACCTCCCGCCTTTGGTTCCTCTCA TAATCTTGAAGCTCTTGCACTGGAAGCCGATAATTCAGGTCACTGTGGTGACCCTTCAGTGCATGTCACTTCAAATTTCTCTCGGCCCATGCATGAAATT ACCTTCTCAGCCGAGGATAAGCCGAAACTGTTAAGCCAGTTGACCTCCATGCTCGCTGATGTTGGATTGAACATTCAAGAAGCACATGCTTTTTCAACAA TAGATGGTTACTCATTGGACGTATTTGTTGTTGATGGTTGGCCTTATGAGGAAACTGAACAACTTCGAACTGCATTGTTGAAGGAAGCATACAAAATCGA GAACCAGTCTTGGTCGAACGATCACTTTCTGCCTTACACAAGAAATCCGGAGCCAGTTAGCTTCAAATGTGATCCTGATTGTGTGACGATACCTCATGAC GGGATTGATGTCTGGGAAATCGATATTAAACAGTTGAAGTTTGAGAACATGGTAGCATCTGGATCATATGGGAATCTGTACAAAGGTACTTACTGCAGCC AGGAAGTTGCTATCAAAGTACTGAAGCCGGAACGACTAAATACGGATATGCAGAAAGAGTTTGCCCAAGAAGTCTACATAATGAGGAAAGTTCGACATAA GAATGTTGTTCAATTCATAGGGGCATGCACCAAACCTCCAAGCTTGTGTATTGTAACAGAATTTATGTCCGGTGGGAGTGTCTATGACTATTTGCATAAA CATAAGGGAGTCTTCAAGCTTCCTTCCTTACTAAAGGTAGCCATAGATGTCTCCAAAGGGATGAACTACTTGCACCAGAATAACATTATTCACCGAGATT TGAAGGCCGCAAATCTTCTCATGGATGAACATGAGGTAGTAAAAGTGGCAGATTTTGGGGTTGCAAGGGTGAAAACTCAATCCGGAGTTATGACAGCCGA AACCGGAACCTACAGATGGATGGCTCCTGAGGTGATTGAGCACAAGCCATATGACCACAAGGCTGACGTCTTCAGTTTCGCCATTGTACTTTGGGAGCTA TTAACCGGAAAGCTTCCGTATGAGTATTTGACACCGCTTCAAGCTGCAGTAGGCGTCGTCCAAAAGAGCTTAAGACCAACGATCCCCAAGCACACCAACC CAAAGCTGACGGAGCTCCTCGAGAGATGCTGGCAACAGGATCCATCACTTAGACCCGACTTTTCCGAAATCATAGAGGTCTTGCAACACATAGCGAAAGA GGTCGGAGAAGATCATCAAGCCGGCGATGCCCGCAAGGATAAGTCACACGGGTTCCTCTCAGTACAAAGGAGAGGCAGCCGCCATTGA
AA sequence Show only first row Show all	>Lus10012517 pacid=23143851 polypeptide=Lus10012517 locus=Lus10012517.g ID=Lus10012517.BGIv1.0 annot-version=v1.0 MVEMTSTTATTVTAEEEEDKSESCGSREVHDTRSVSPSPSMSPPPHGRQQKQKLEVYNEVLSRLQGSEEADRAGFDDELWSHFSRLPVRYALDVNVERAE DVLMHKRLLHLAHDPANRPVIEVRLVQVPPSTDGKWDDSTYPYHNREETAESSRQSIHPPPAFGSSHNLEALALEADNSGHCGDPSVHVTSNFSRPMHEI TFSAEDKPKLLSQLTSMLADVGLNIQEAHAFSTIDGYSLDVFVVDGWPYEETEQLRTALLKEAYKIENQSWSNDHFLPYTRNPEPVSFKCDPDCVTIPHD GIDVWEIDIKQLKFENMVASGSYGNLYKGTYCSQEVAIKVLKPERLNTDMQKEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSVYDYLHK HKGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDEHEVVKVADFGVARVKTQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFAIVLWEL LTGKLPYEYLTPLQAAVGVVQKSLRPTIPKHTNPKLTELLERCWQQDPSLRPDFSEIIEVLQHIAKEVGEDHQAGDARKDKSHGFLSVQRRGSRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10012517 [exp]	0	1
AT2G17020			F-box/RNI-like superfamily pro...		Lus10012518 [exp]	1.4	0.8836
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10011137 [exp]	2.4	0.8989
AT5G38840	FHA		SMAD/FHA domain-containing pro...		Lus10005098 [exp]	3.9	0.8489
AT3G01960			unknown protein		Lus10012546 [exp]	4.2	0.8228
AT1G19050		ARR7	response regulator 7 (.1)		Lus10036642 [exp]	6.2	0.7707
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	6.3	0.8023
AT5G24280		GMI1	gamma-irradiation and mitomyci...		Lus10022400 [exp]	6.6	0.7644
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	7.5	0.8722
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	12.0	0.8442
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	12.0	0.8175

Compare expression of checked genes

Lus10012517 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.