Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17020 518 / 4e-177 F-box/RNI-like superfamily protein (.1) AT1G55590 211 / 9e-60 RNI-like superfamily protein (.1) AT4G15475 73 / 4e-13 F-box/RNI-like superfamily protein (.1) AT2G25490 62 / 8e-10 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 54 / 2e-07 EBF2 EIN3-binding F box protein 2 (.1) AT5G27920 51 / 2e-06 F-box family protein (.1) AT5G23340 47 / 2e-05 RNI-like superfamily protein (.1) AT3G60350 48 / 3e-05 ARABIDILLO-2, ARABIDILLO2 F-box Armadillo protein 2, ARABIDILLO-2 (.1) AT3G58530 47 / 3e-05 RNI-like superfamily protein (.1) AT5G01720 47 / 4e-05 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023988 [exp] 547 / 0 AT2G17020 519 / 3e-178 F-box/RNI-like superfamily protein (.1) Lus10022652 [exp] 230 / 7e-72 AT2G17020 102 / 1e-25 F-box/RNI-like superfamily protein (.1) Lus10025093 [exp] 202 / 4e-61 AT2G17020 216 / 5e-67 F-box/RNI-like superfamily protein (.1) Lus10025094 [exp] 164 / 2e-47 AT2G17020 152 / 8e-44 F-box/RNI-like superfamily protein (.1) Lus10022651 [exp] 143 / 8e-41 AT2G17020 61 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10040998 [exp] 69 / 5e-12 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 67 / 6e-11 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10026472 [exp] 62 / 1e-09 AT4G33210 1225 / 0.0 SLOW MOTION, F-box family protein (.1) Lus10013444 [exp] 61 / 1e-09 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G179571 [exp] 610 / 0 AT2G17020 665 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.009G139500 [exp] 610 / 0 AT2G17020 638 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.011G169800 [exp] 182 / 1e-49 AT1G55590 617 / 0.0 RNI-like superfamily protein (.1) Potri.006G068500 [exp] 67 / 3e-11 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 65 / 9e-11 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G238300 [exp] 62 / 6e-10 AT5G23340 98 / 1e-22 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 61 / 2e-09 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G061700 [exp] 59 / 7e-09 AT1G15740 612 / 0.0 Leucine-rich repeat family protein (.1) Potri.016G128400 [exp] 54 / 2e-07 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.018G027700 [exp] 54 / 3e-07 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012518 pacid=23143906 polypeptide=Lus10012518 locus=Lus10012518.g ID=Lus10012518.BGIv1.0 annot-version=v1.0 ATGGCCACCGGCGATGATGTCGGAGGCGGCGGAGAAGGAGATCAGCTGGATCGACTTCCGGCAGGCCTTCTTTCCACCATAATGTCAAGGCTCGACGCAG CTTCAATCTGCTCCTTCTCTACCACTTGCAAAGCCTACAGAGCTTTCGTTTCCCATATCTTCACTTTCATCCCCAACTTTCGCCTCTACGAGGTTGCACT TCCGTTTGATTCACTGAGGCCTCTTTTGCCACCAAACCCTAGTCTCAAAAGCTTGAAACTCGACTGTCGTCGGCTTGATGATACAGCTACCAGTTTCTTG GTTCGCCCTTCTTTAGAAGAGCTCTCTATGCACAACTGCTTTGACTTCAGTGGGAAATTGCTGATTGAAATTGGTGAGAGGTGTCCGGATTTGAGGTATC TTTACTTGGGTTCAGTGGCTGGAAATGTTGGTAGATCTATAGGAATGTCTGATTGGGAGAAGTTGCTCACCGGTTGCAAGCAGTTGAAAGAACTCATCTT GATGTTCAATGTCTACATGTATTTCGCCCACAAGTTCCATCAAGTTTGGGAATCGGCTACCGGGAAGCTCGAGTCCCTCGAGATTGGATACATTCCGTCG TTCATGGTAACCGAGCTGTTCAGTCCAAACGCGATACCTCGACCTCCGAATTCCGTTCAGCCAAGTAGTACTCTTCCCAACATCCGGAAGCTGTGCCTCT ATGTGGACTGTGTTACCGACACTATGGTCGCAACAATATCGAGCGGTTTGGTAACCTTGACACATCTAGATCTTCGAGATGCACCGTTCGGGGAACCAAC TCTTACGTCTGATCTCACCAACTCTGGCCTTTCGCTGATTAATCAGCACGGGAAGCTTAAACATCTCTCTCTAATCCGGAGCCAGGAGTACTTCGCTGCG TTCTTCAGACGAGTCACTGATCCCGGGTTGATTACGATAGCTACTAAGGCCGTGAATATGGAAAGTTTATGCCTCGGTGGCTTCTGTCACGTTACGTATA CAGGGTTCAACACGGTCCTACTTTCATGCCCTAGACTTCACAAGCTCATAGTTCGCCATGGCACCCACTTGACCGAGCATGTGTTTCGTGGCATCTCTAC GAAAGTTCCCCTTTTGAGTGATGTCAGCTTGAGATGGTGTCACCGCTTATCACACCAAGCAATATCCCATTTGGTTTCGAACCAGCTGGAAGTTCTCGAC TTGCGAGAATGTAAGAAGCTCAACGATGATTCGCTCAAGGCCATCGGCAGGCTTTCCAAACTGAGAGTCCTGAAGCTGGACGGTTCAGATGTGACCGATT CGGGACTGTCTTTCCTCAGGCCGAGAGTCATGAAATCCCTAACGACATTATCTCTTCGAGGATGCAGGAGGCTCACAGACGAATGCATATCGGCCCTATT CGATGATGGTGGCACCAATTCCTCGAACCCATTGCTACAAGAGCTGGATCTTTCCTGCATCTACAGATTCTCTGACCGTGGGATCTTGTCACTCATCGGG GCTAGCGTACCGATATCTAAGCTGCGATTACGAGAGTGTCCACTCGTCACTGAAGCTTCGGTGGCAGCATTGGCCTCGATGGACGGTAACTGTCTGCGCC TGTTGGATCTTCATGACGTACTTGTCTGCATTTCGCAGAATGTATTAAGGTGGTTCGAGAAACCCTACTTTCCGAAACTGAGATCGCTTGGAATTGGAAT CACAGGGTGTGGGAATCAGGATGCCGCTGATGCCCTAGCTAGGACCAGACCGTTCCTGCACGTTGAACGCTACGGCAGCGAGCTTGTCCCGGAGCGGTGG GACAATGTGGATGGTTTGAACATTAACAGGCACGAGGAATTCGAAGCCCTCGAAATGTGGCTTCTCGGAGAAAGAGAGTTTGATGATGTGGACATGGTTG ATGCCGAGAACCCTGCAGGGATGCTGCTAGCATGA
AA sequence Show only first row Show all	>Lus10012518 pacid=23143906 polypeptide=Lus10012518 locus=Lus10012518.g ID=Lus10012518.BGIv1.0 annot-version=v1.0 MATGDDVGGGGEGDQLDRLPAGLLSTIMSRLDAASICSFSTTCKAYRAFVSHIFTFIPNFRLYEVALPFDSLRPLLPPNPSLKSLKLDCRRLDDTATSFL VRPSLEELSMHNCFDFSGKLLIEIGERCPDLRYLYLGSVAGNVGRSIGMSDWEKLLTGCKQLKELILMFNVYMYFAHKFHQVWESATGKLESLEIGYIPS FMVTELFSPNAIPRPPNSVQPSSTLPNIRKLCLYVDCVTDTMVATISSGLVTLTHLDLRDAPFGEPTLTSDLTNSGLSLINQHGKLKHLSLIRSQEYFAA FFRRVTDPGLITIATKAVNMESLCLGGFCHVTYTGFNTVLLSCPRLHKLIVRHGTHLTEHVFRGISTKVPLLSDVSLRWCHRLSHQAISHLVSNQLEVLD LRECKKLNDDSLKAIGRLSKLRVLKLDGSDVTDSGLSFLRPRVMKSLTTLSLRGCRRLTDECISALFDDGGTNSSNPLLQELDLSCIYRFSDRGILSLIG ASVPISKLRLRECPLVTEASVAALASMDGNCLRLLDLHDVLVCISQNVLRWFEKPYFPKLRSLGIGITGCGNQDAADALARTRPFLHVERYGSELVPERW DNVDGLNINRHEEFEALEMWLLGEREFDDVDMVDAENPAGMLLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17020			F-box/RNI-like superfamily pro...		Lus10012518 [exp]	0	1
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10012517 [exp]	1.4	0.8836
					Lus10007178 [exp]	2.2	0.8550
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	3.9	0.8645
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10011137 [exp]	4.5	0.8716
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10020306 [exp]	4.6	0.8509
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	6.0	0.8474
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020315 [exp]	6.5	0.8190
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	10.0	0.8568
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10039795 [exp]	10.2	0.8370
					Lus10043038 [exp]	11.2	0.8360

Compare expression of checked genes

Lus10012518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.