Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17030 115 / 2e-29 F-box family protein with a domain of unknown function (DUF295) (.1) AT2G17036 86 / 6e-19 F-box family protein with a domain of unknown function (DUF295) (.1) AT4G35733 62 / 7e-11 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G24040 49 / 2e-06 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2) AT5G60060 47 / 9e-06 Protein of unknown function (DUF295) (.1) AT1G65770 45 / 2e-05 AMR1 ascorbic acid mannose pathway regulator 1 (.1) AT2G26160 45 / 4e-05 F-box family protein with a domain of unknown function (DUF295) (.1) AT1G44080 45 / 4e-05 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021517 [exp] 196 / 3e-60 AT2G17030 166 / 2e-47 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022618 [exp] 182 / 3e-56 AT2G17030 117 / 3e-30 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10025100 [exp] 161 / 1e-46 AT2G17030 335 / 4e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10023984 [exp] 160 / 2e-46 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10022650 [exp] 128 / 3e-35 AT2G17030 96 / 4e-22 F-box family protein with a domain of unknown function (DUF295) (.1) Lus10028385 [exp] 51 / 4e-07 AT1G65770 116 / 4e-29 ascorbic acid mannose pathway regulator 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G179685 [exp] 127 / 8e-34 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.009G140000 [exp] 124 / 7e-33 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105400 [exp] 59 / 6e-10 AT1G65770 148 / 8e-41 ascorbic acid mannose pathway regulator 1 (.1) Potri.001G277400 [exp] 58 / 2e-09 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.002G014500 [exp] 49 / 1e-06 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105100 [exp] 43 / 0.0002 AT1G65770 135 / 3e-36 ascorbic acid mannose pathway regulator 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012519 pacid=23143856 polypeptide=Lus10012519 locus=Lus10012519.g ID=Lus10012519.BGIv1.0 annot-version=v1.0 ATGGCGCGCTGCTCTAAGTATCTCCCTAGCGAACTCGTGGACGGAATCGTCAGCCTCCTCGACACCGAGACCGACATCCTCCGCTCCGGTTCCGTCTGCC GCTTGTGGCGTAACTCCGCCGTCCGCAGGGCTCGTAGTTTACCAGCCGGCCACCACGTCCTCCACGGCGACGGCACAGGAATCATGGAGTCTCACCTCTA CAAGCACTCGATCAACCTCGTCGGCGATCCGGATCAAGGCGGTTGGCTTGTGAAGGTGGCAGACCGAGAGCACGTTCCGGTTGGTAAGCGCCTGCTTAAT CCTCTATCAGCATTCCCTTTCCGTTTGGATTCATTGCCCGAGAACATCCCTAGTGTCTTGCCTATGCGGAGATTTAGGATTAAGGAGCTGCATCAGCTTT ACGTCTTACGAAACGCCGTATGTTGGAGTGTGATTTACAGAAAGGCGGCCATTTCTTGGTCGTCTTCGGAGAGGAGTGGCGAATTTGTTTTGCTTACGAT TAAGGGAGGTAGGCTAGCGAAATTCAATAGTTTCAAACGGAAATGGACTTTGTTAGCCGATCGTAGTGGCTTTAAGGATGTGATTGTTCACAAGGGGGAG TTGCTTGGCGTTGATATCACCGGCAGAGTCGTGATAATTGATAAGGAGGACAACGATGGGGAGGAACGATTGATCGTTGCTGCGATTGGCAGTCCAAGAT TACTTAGCAGGAAGAAGTACTTGGTTCAGTCCATCGATGGTGAGTTGGTGTTAGTCGAAAGATACGAGCTGACGAATGTGTTGAGAGCAGGTATCTTTGG TTCCATTCCGATGGGAAGTTGA
AA sequence Show only first row Show all	>Lus10012519 pacid=23143856 polypeptide=Lus10012519 locus=Lus10012519.g ID=Lus10012519.BGIv1.0 annot-version=v1.0 MARCSKYLPSELVDGIVSLLDTETDILRSGSVCRLWRNSAVRRARSLPAGHHVLHGDGTGIMESHLYKHSINLVGDPDQGGWLVKVADREHVPVGKRLLN PLSAFPFRLDSLPENIPSVLPMRRFRIKELHQLYVLRNAVCWSVIYRKAAISWSSSERSGEFVLLTIKGGRLAKFNSFKRKWTLLADRSGFKDVIVHKGE LLGVDITGRVVIIDKEDNDGEERLIVAAIGSPRLLSRKKYLVQSIDGELVLVERYELTNVLRAGIFGSIPMGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17030			F-box family protein with a do...		Lus10012519 [exp]	0	1
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Lus10016172 [exp]	2.2	0.7910
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10013479 [exp]	4.7	0.8042
AT4G21660			proline-rich spliceosome-assoc...		Lus10018475 [exp]	6.2	0.8162
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Lus10019894 [exp]	14.4	0.7933
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10010121 [exp]	18.3	0.7915
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10012545 [exp]	20.2	0.7343
AT2G30120			unknown protein		Lus10026389 [exp]	35.1	0.7601
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	36.9	0.7784
AT1G04390			BTB/POZ domain-containing prot...		Lus10027380 [exp]	40.6	0.7690
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10017623 [exp]	45.6	0.7563

Compare expression of checked genes

Lus10012519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.