Plant FIBer expression Database

Lus10012520 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16210 220 / 3e-72 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022649
[exp]
285 / 1e-97 AT1G16210 302 / 1e-104 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G140200
[exp]
225 / 2e-74 AT1G16210 229 / 6e-76 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0114 HMG-box PF06244 Ccdc124 Coiled-coil domain-containing protein 124 /Oxs1
Representative CDS sequence
>Lus10012520 pacid=23143852 polypeptide=Lus10012520 locus=Lus10012520.g ID=Lus10012520.BGIv1.0 annot-version=v1.0
ATGCCGAAGAAGATGGGAGTGAACAGCAAGGCCGAGGAGGCCAGGGCGCGGAAGAACGCGTCGGAGAGCGAGAAGAAGGATCGGGAGGCGCGCGACAAGG
AAGAGAAGTACTGGCGCGAAGCGGAAGGTCCCAAGTCCAGGGCGGCGAAGAAGCGGGAGGAAGAGGAGGAGAAGCGCGCGGAGGCGGCGGCGAGGAAAGC
TGAGGCGAAGCGGCTGGCGGAGCAGGAGGAGAAGGATCTGGAGAAGTCGCTGAAGAGCAAGATGGACGCCAAGAAGGCGAACCGGGTGGCGATCCCCGTG
CCGAAGGTGACGGAGGCGGAGCTGAGGAGGAGGAGGGAGCAGGATCAGGCGGAGATGGCGAAGAAGTCGGAGGAGGCGAAGAAGAAGCAGGCCAGGACTG
CTGAAGAGGAGGAGTACGAGAGGATGGTGCTGGTTGAGAATAAGAATCGGGATGACTCGATCTTGGAGGCTAGGACTGTGGAGGAAGCTGTCGCTAAGCT
GAGTGTTGTGGAAGGGAGCAGCTTGCCTGTTGATCGGCATCCCGAGAAGAGGCTCAAGGCTTCATTTAAGGTTTTCGAAGAAGCTGAGCTCCCTCAGCTG
AAGGAAGAGAAGCCAGGACTGACACACAACCAATACAAAGACATGATATGGAAGATGTGGAAGAAGTCTCCAGACAATCCTCTTAACCAGATTGGTGAAT
AA
AA sequence
>Lus10012520 pacid=23143852 polypeptide=Lus10012520 locus=Lus10012520.g ID=Lus10012520.BGIv1.0 annot-version=v1.0
MPKKMGVNSKAEEARARKNASESEKKDREARDKEEKYWREAEGPKSRAAKKREEEEEKRAEAAARKAEAKRLAEQEEKDLEKSLKSKMDAKKANRVAIPV
PKVTEAELRRRREQDQAEMAKKSEEAKKKQARTAEEEEYERMVLVENKNRDDSILEARTVEEAVAKLSVVEGSSLPVDRHPEKRLKASFKVFEEAELPQL
KEEKPGLTHNQYKDMIWKMWKKSPDNPLNQIGE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G16210 unknown protein Lus10012520
[exp]
0 1
AT5G44860 unknown protein Lus10036220
[exp]
1.4 0.8973
AT3G05670 RING/U-box protein (.1) Lus10015213
[exp]
1.4 0.8952
Lus10041517
[exp]
3.0 0.8876
AT5G59550 zinc finger (C3HC4-type RING f... Lus10004712
[exp]
3.5 0.8804
AT5G61030 GR-RBP3 glycine-rich RNA-binding prote... Lus10021154
[exp]
4.5 0.8713
AT5G60570 Galactose oxidase/kelch repeat... Lus10041299
[exp]
4.9 0.8628
AT2G16920 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGAT... Lus10016921
[exp]
10.2 0.8546
AT3G63000 NPL41 NPL4-like protein 1 (.1) Lus10017163
[exp]
13.2 0.8596
AT5G55160 ATSUMO2, SUMO2,... small ubiquitin-like modifier ... Lus10043185
[exp]
14.3 0.8154
AT3G02510 Regulator of chromosome conden... Lus10017581
[exp]
14.7 0.8205

Lus10012520 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.