Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 37 / 0.0008 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037323 [exp] 46 / 5e-07 AT3G18990 79 / 2e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009214 [exp] 43 / 2e-06 AT1G49480 40 / 6e-05 related to vernalization1 1 (.1) Lus10015266 [exp] 43 / 7e-06 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10039303 [exp] 43 / 7e-06 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002934 [exp] 42 / 3e-05 AT3G18990 112 / 5e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10015248 [exp] 41 / 4e-05 AT4G33280 50 / 3e-07 AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 40 / 5e-05 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 40 / 5e-05 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023079 [exp] 40 / 9e-05 AT3G18990 69 / 3e-13 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G147000 [exp] 45 / 9e-07 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 38 / 0.0003 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10012521 pacid=23143810 polypeptide=Lus10012521 locus=Lus10012521.g ID=Lus10012521.BGIv1.0 annot-version=v1.0 ATGCAGACCATTCCAAAATCGTTCATGGACAATGTCGAGGAAGTTTACGGTGGAGCCGAGACCGCAGAGTTATGGGTAGCAGCCAAATGCCGGAGAGTGA GGATCCGAAGAAGTGTGAAAGAAAGTCGCAGCAATTTGGGTTCTGGATGGGGCGATTTCGCAACGGACAATTCTCTGGAAGTCGGAGATGTTTGTGTTTT CGAGCTTAAATGTGAAGAGGATGATGGTGTTGGTGGTGGAAGCAGTGGAAGAAAGGTGGTGTTTGGTGTTCATATATTCAGAAGAAGATGA
AA sequence Show only first row Show all	>Lus10012521 pacid=23143810 polypeptide=Lus10012521 locus=Lus10012521.g ID=Lus10012521.BGIv1.0 annot-version=v1.0 MQTIPKSFMDNVEEVYGGAETAELWVAAKCRRVRIRRSVKESRSNLGSGWGDFATDNSLEVGDVCVFELKCEEDDGVGGGSSGRKVVFGVHIFRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012521 [exp]	0	1
AT1G22610			C2 calcium/lipid-binding plant...		Lus10010269 [exp]	4.9	0.7104
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10010230 [exp]	8.7	0.7740
AT1G68490			unknown protein		Lus10027557 [exp]	13.8	0.7568
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10008065 [exp]	19.0	0.7188
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024578 [exp]	19.7	0.6830
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10012448 [exp]	20.4	0.6728
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10035109 [exp]	22.1	0.7208
AT1G61420			S-locus lectin protein kinase ...		Lus10019600 [exp]	23.5	0.6976
AT4G23410		TET5	tetraspanin5 (.1)		Lus10036518 [exp]	26.5	0.6805
AT1G61100			disease resistance protein (TI...		Lus10025112 [exp]	26.6	0.7138

Compare expression of checked genes

Lus10012521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.