Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58610 269 / 2e-78 PHD finger transcription factor, putative (.1) AT3G14980 246 / 8e-70 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G63900 215 / 4e-62 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT5G36740 216 / 9e-60 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 211 / 7e-58 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT4G14920 198 / 1e-53 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 179 / 3e-47 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G53680 145 / 2e-36 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 145 / 3e-36 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 137 / 2e-33 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015266 [exp] 469 / 7e-149 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10042283 [exp] 368 / 6e-112 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10025386 [exp] 317 / 2e-97 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1) Lus10007741 [exp] 260 / 9e-77 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10018681 [exp] 257 / 2e-75 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10042602 [exp] 223 / 8e-62 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10022053 [exp] 212 / 4e-58 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10006110 [exp] 208 / 6e-57 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 205 / 8e-56 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072600 [exp] 370 / 5e-114 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 304 / 4e-92 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.001G392801 [exp] 229 / 4e-64 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 210 / 1e-57 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 202 / 9e-57 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.008G152600 [exp] 205 / 5e-56 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 199 / 6e-54 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G051400 [exp] 198 / 1e-53 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.006G083600 [exp] 153 / 7e-39 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 152 / 1e-38 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10012522 pacid=23143896 polypeptide=Lus10012522 locus=Lus10012522.g ID=Lus10012522.BGIv1.0 annot-version=v1.0 ATGTGCTTTACAGAGAAATTCCATGTAAAGTATGATCATTTACTTCTTGACGATTCCTCAGACCACATTGTTGAATCCGTGAATGTTTCTTTAGTTGTGT CCTCCCAAAAGAAGAGATCTTGCATTAACACTACGACTAGTACTCGTGGATACATTAGGCCATTGCCTCCTTTGATCGAGTTGAACAAATGGGGGCTTCC TTTTGGGCTGTGTGTGGATGTGAATCACAATGAGGGTTGGTGGGAAGGTGTGATTTTCGACTATGAGGACGGTTTCGAAGAGAGGAATGTTTTCTTCCCT GATTTGGGGGATGAGATGGTGGCTCCTTTGAGTGCATTGAGGATCACTCAGGACTGGGATGAGGTGTCTGAGGAATGGACTCGTCGAGGGACGTGGATGT TTCTTGAGGTGGTTGAGGGGTATCAGATTCCGGTTTCAATCAAGCAACTTTGGTATGACTTGCAGGATAATGAACGGATGGTTGGGGATTGGACTTGCTC TTTGAGATCTGTATGGGAAGAGTTGGTTTCGGGGGCGGTTCGTGGTAATGTTGAACTTGTGTTGGATCGTCTCTTTGATGAAGTTAGGATTCCACAATGT GGAGAGAAGCTATCGGAGATTGCTGAGTCGGTTAGTTTGAGCAGTGAAGAAGAAGGTGGGAGGGAAATTTGTGGATTTGAAGTACCGGTCGAGGAAGAAG AAGAAGAAGAAGAAGTAGAATCGGCTTCGAATGGAGTTAATGACAGTTCGCGTGAGACTGAGAACGATGATGTTTGTTCTGTTTGTCGATCTGGAGGAGA TTTAATCTTGTGTGATCAGTGTCCATCTTCATTCCATGGTAGTTGCCTTGGTATGAAGGATGTTCCGAGAGGAGACTGGTTCTGCCCCTCATGTTGCTGT AGAATTTGCAATCAGAATAAAGTGCTCAAAGAATGTGAGGGTATTCAGAAATGCACCCAATGCGAGTACAGATATCACATTACATGCCTGAGGAACAATG GAGTAGATAATCTGGACCTTGACCACAGAGTCAACTGGTTTTGCAGGAACAACTGTAGAAAGATATATGGTAGCCTTGCCACACTCGTGGGATTGCCTAT TCCGGTTGGCATCGATGACCTTACGTGGACGTTACTAAAATACGCGGAGTATGATGCCGAAGAAGAATCTGAATCTGTTGTTTCTGGTATTGAGGCGGCT GAAGCTCAGAGTTACATGAAATGTGAGATTGCTCTTCATGTGATGCACGAATGTTTCGAGCCTCTAGAAGAATTCTGGACGGGCAGAGATATCGTAAATG ATGTCATTTTCAGTAGGAGGTCTGAACTTAGACGCCTGGACTTTCGAGCCTTCTATACCGTGGTTTTGGAGAAAGATGATGAAGTAATCAGTGTGGCAAC TTTAAGGATTTTCGGAGAGACTGCGGGAGAAGTACCTCTAGTTGCCACAAGGCATAAGTATCGTCGTCTTGGAATGTGCCGAATATTGATGAACGCGATT GAAAAGAAATTGACTGAACTAGGAGTTGAGAGGCTGGTTCTACCTGCTGTTCCTGCTGTGTTAAACACATGGACCGGTTCGTTCGGGTTCTCAAAGATGA CAGATTCCGAGAGACTGCGGTTTGCAGACTCCTTTTTATTGAACTTTCCAGGCGCTATCTTGTGTCACAAGCTATTAACGTCCACTAAATCAAGTCCATT GCTGAAAGAGATCCCAGCAAAAACCGATGAAAGCAATACCTGTGGAAAGGTCGAAGAAATGGAGGTGGGGCTTGATGGATCATCCAGCCTGGTATCTGAA GTGGTTCAAGCTGAGGAAACAGAACAATTTGTTGAAGTATTACAGAAGAAGAAAGATCAGTAG
AA sequence Show only first row Show all	>Lus10012522 pacid=23143896 polypeptide=Lus10012522 locus=Lus10012522.g ID=Lus10012522.BGIv1.0 annot-version=v1.0 MCFTEKFHVKYDHLLLDDSSDHIVESVNVSLVVSSQKKRSCINTTTSTRGYIRPLPPLIELNKWGLPFGLCVDVNHNEGWWEGVIFDYEDGFEERNVFFP DLGDEMVAPLSALRITQDWDEVSEEWTRRGTWMFLEVVEGYQIPVSIKQLWYDLQDNERMVGDWTCSLRSVWEELVSGAVRGNVELVLDRLFDEVRIPQC GEKLSEIAESVSLSSEEEGGREICGFEVPVEEEEEEEEVESASNGVNDSSRETENDDVCSVCRSGGDLILCDQCPSSFHGSCLGMKDVPRGDWFCPSCCC RICNQNKVLKECEGIQKCTQCEYRYHITCLRNNGVDNLDLDHRVNWFCRNNCRKIYGSLATLVGLPIPVGIDDLTWTLLKYAEYDAEEESESVVSGIEAA EAQSYMKCEIALHVMHECFEPLEEFWTGRDIVNDVIFSRRSELRRLDFRAFYTVVLEKDDEVISVATLRIFGETAGEVPLVATRHKYRRLGMCRILMNAI EKKLTELGVERLVLPAVPAVLNTWTGSFGFSKMTDSERLRFADSFLLNFPGAILCHKLLTSTKSSPLLKEIPAKTDESNTCGKVEEMEVGLDGSSSLVSE VVQAEETEQFVEVLQKKKDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58610			PHD finger transcription facto...		Lus10012522 [exp]	0	1
AT2G05760			Xanthine/uracil permease famil...		Lus10030014 [exp]	8.9	0.8929
AT2G19930			RNA-dependent RNA polymerase f...		Lus10012965 [exp]	9.9	0.8611
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011730 [exp]	15.5	0.8749
AT3G58530			RNI-like superfamily protein (...		Lus10012294 [exp]	17.3	0.8783
AT4G39790			Protein of unknown function (D...		Lus10024039 [exp]	20.3	0.8646
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040584 [exp]	22.6	0.8403
AT3G12210			DNA binding (.1.2)		Lus10018653 [exp]	24.5	0.8547
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002391 [exp]	24.8	0.8694
AT4G39790			Protein of unknown function (D...		Lus10041710 [exp]	25.1	0.8738
AT1G48620		HON5	high mobility group A5 (.1)		Lus10028911 [exp]	29.6	0.8462

Compare expression of checked genes

Lus10012522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.