Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46340 769 / 0 RWA1 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) AT2G34410 762 / 0 RWA3 REDUCED WALL ACETYLATION 3, O-acetyltransferase family protein (.1.2.3) AT1G29890 736 / 0 RWA4 REDUCED WALL ACETYLATION 4, O-acetyltransferase family protein (.1.2) AT3G06550 660 / 0 RWA2 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003348 [exp] 958 / 0 AT5G46340 905 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10015265 [exp] 783 / 0 AT5G46340 849 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10017079 [exp] 684 / 0 AT3G06550 859 / 0.0 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3) Lus10000367 [exp] 678 / 0 AT1G29890 605 / 0.0 REDUCED WALL ACETYLATION 4, O-acetyltransferase family protein (.1.2) Lus10037795 [exp] 666 / 0 AT5G46340 838 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352300 [exp] 842 / 0 AT2G34410 880 / 0.0 REDUCED WALL ACETYLATION 3, O-acetyltransferase family protein (.1.2.3) Potri.011G079400 [exp] 811 / 0 AT2G34410 861 / 0.0 REDUCED WALL ACETYLATION 3, O-acetyltransferase family protein (.1.2.3) Potri.008G102300 [exp] 698 / 0 AT3G06550 843 / 0.0 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3) Potri.010G148500 [exp] 678 / 0 AT3G06550 829 / 0.0 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [flax] [poplar] Acyl_transf_3 PF07779 [flax] [poplar] Cas1_AcylT 10 TM Acyl Transferase domain found in Cas1p
Representative CDS sequence Show only first row Show all	>Lus10012523 pacid=23143829 polypeptide=Lus10012523 locus=Lus10012523.g ID=Lus10012523.BGIv1.0 annot-version=v1.0 ATGGTGGCGGTGCCTGGTCCGATTACGCCTGGACAGGTGTCCTTTTTACTTGGTTTTATCCCGGTCTTTATTGCATGGATGTACTCAGAGTTCCTAGAGT ATAAGAGGTCTTCATCTCCTCCCAAAGTTCATTCAGACAACAATTTGGAAGAATTAGAAAAGATTGTCGTCAAAGAAGATGATCGGGCAGTGTTGTTGGA AGGGGGTCTTGCAAGATCAGCTTCAGCAAAATTTCACGTTTCATCCATAAAAATGAATTTAATTAGGTTTGTGACCATGGAGGATTCTTTCTTGTTGGAA AACAGAGCGACCTTGAGAGCAATGGCTGAATTTGGGGCAGTTTTGGTGTACTTCTATATCTGTGATCGCACGAACTTGCTGGGAGATTCTACCAAAACAT ACAACCGTGACTTATTTCTATTTCTCTACATCCTGCTCATCATAGTATCAGCAATGACTTCCTTTAAGAAGCATACTGACAAGTCCGCATTCTCTGGGAA ATCCATTATGTACCTAAATAGGCATCAGACCGAGGAGTGGAAAGGATGGATGCAGATGATATCAAAGCTTGGTGTTGTTACTGTACATGTGTTTTTCCTC ATGTATCATTACTTTGCAGCGGCAGAGATTTACAATGCGATACGAGTTTTTATTGCTGCTTATGTTTGGATGACTGGATTTGGAAACTTCTCTTACTATT ACATTAGGAAAGATTTTAGTGTAGCACGCTTTGCTCAGATGATGTGGCGGCTCAATTTCTTTGTGGTGTTCTGCTGCATTGTCCTTAACAATGACTATAT GTTATATTATATCTGCCCAATGCACACGCTCTTCACGTTGATGGTGTATGGATCTCTGGGTATATTCAATAAGTACAATGAGAATAACTCCGTGATGGCT GTGAAAATTCTTTCCTGCTTTCTTGCTGTAATCTTGATCTGGGAAGTCCCTGGGGTTTTCGAAATCCTCTGGAGTCCTTTGACATTTATGTTAGGGTACA CTGATCCTGCAAAACCAGACTTCCCAAGACTGCATGAATGGCATTTCAGATCTGGGCTTGATCGTTATATATGGATCATAGGAATGATTTATGCTTATTA TCACCCGAATGTTAAAAAAGGGATGGAGAAACTGGAAGAATCCGATACAAAAAAGAAGCTTTCGATCAAAACAGGAGTCGTGTCGGTCACTGTATTCGTG GGGTATATGTGGTATGAACATATTTACAAAATGGACAAGGTAACCTACAACAAGTTCCACCCATACACATCATGGATTCCGATCACTCTTGCGGAATTTC ACTCACGAGCTAAGGGGCTGCTCTTTAACTCTATTCGCTTGGCTTGGGAAGATCACTTTGGAGACCTATATTTCACAGTTCCATATCTGGTTGAGATGCC TGTTGTACGGCAAAATTGGCTGTTATCCTTGATCCCAGAGTATCCAATGTTGAATTTCATGCTCACGACTTCCATTTACGTCCTGTTGTCCCATCGGATC TTTGACCTGACGAACACGCTAAAGTCAGTGTTCATTCCAACAAAAGACAATCGACGGCTGTTCTACAATTTTGTCACCGGAGCTGCTATCTCCTTGTTTT TGTACCTTGTCTCCCTTATTCTTCTCCAAATCCCCCGCTCACCGGTAAGTTTCCCCAAGATTGTCCACCGGTATGGAACCAAAATACGTGATGTCTGGTA CGTTCTCTCGCAGGAAATGTAA
AA sequence Show only first row Show all	>Lus10012523 pacid=23143829 polypeptide=Lus10012523 locus=Lus10012523.g ID=Lus10012523.BGIv1.0 annot-version=v1.0 MVAVPGPITPGQVSFLLGFIPVFIAWMYSEFLEYKRSSSPPKVHSDNNLEELEKIVVKEDDRAVLLEGGLARSASAKFHVSSIKMNLIRFVTMEDSFLLE NRATLRAMAEFGAVLVYFYICDRTNLLGDSTKTYNRDLFLFLYILLIIVSAMTSFKKHTDKSAFSGKSIMYLNRHQTEEWKGWMQMISKLGVVTVHVFFL MYHYFAAAEIYNAIRVFIAAYVWMTGFGNFSYYYIRKDFSVARFAQMMWRLNFFVVFCCIVLNNDYMLYYICPMHTLFTLMVYGSLGIFNKYNENNSVMA VKILSCFLAVILIWEVPGVFEILWSPLTFMLGYTDPAKPDFPRLHEWHFRSGLDRYIWIIGMIYAYYHPNVKKGMEKLEESDTKKKLSIKTGVVSVTVFV GYMWYEHIYKMDKVTYNKFHPYTSWIPITLAEFHSRAKGLLFNSIRLAWEDHFGDLYFTVPYLVEMPVVRQNWLLSLIPEYPMLNFMLTTSIYVLLSHRI FDLTNTLKSVFIPTKDNRRLFYNFVTGAAISLFLYLVSLILLQIPRSPVSFPKIVHRYGTKIRDVWYVLSQEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10012523 [exp]	0	1
AT1G29890		RWA4	REDUCED WALL ACETYLATION 4, O-...		Lus10000367 [exp]	2.8	0.9713
AT5G46220			Protein of unknown function (D...		Lus10038497 [exp]	4.4	0.9448
AT5G45290			RING/U-box superfamily protein...		Lus10035680 [exp]	4.9	0.9605
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10003348 [exp]	5.0	0.9637
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008225 [exp]	5.1	0.9708
AT5G60720			Protein of unknown function, D...		Lus10021450 [exp]	5.5	0.9659
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	9.4	0.9647
AT1G13635			DNA glycosylase superfamily pr...		Lus10019199 [exp]	11.2	0.9598
AT2G20650			RING/U-box superfamily protein...		Lus10039848 [exp]	11.4	0.9518
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	11.7	0.9615

Compare expression of checked genes

Lus10012523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.