Plant FIBer expression Database

Lus10012525 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023787
[exp]
118 / 2e-32 ND 44 / 3e-04
Lus10001889
[exp]
107 / 9e-31 AT1G52950 42 / 6e-05 Nucleic acid-binding, OB-fold-like protein (.1)
Lus10042979
[exp]
112 / 7e-30 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Lus10025008
[exp]
111 / 1e-29 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Lus10027612
[exp]
110 / 4e-29 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1)
Lus10006887
[exp]
100 / 7e-26 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1)
Lus10010590
[exp]
100 / 2e-25 ND /
Lus10008725
[exp]
92 / 1e-24 ND 38 / 0.003
Lus10003025
[exp]
91 / 1e-22 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10012525 pacid=23143860 polypeptide=Lus10012525 locus=Lus10012525.g ID=Lus10012525.BGIv1.0 annot-version=v1.0
ATGTGGAAGCTCTGCAATCCGGCCGAACCAGCTAAACTTTTCGCCCTAGGGACGCTTTGGACAGATGCAGAGGATACTCGGATTCCGGGCGATATGTTGC
GCTCTTTTGCTGCTGACTTGGACAAATGCATCTCGGTCGGGTCCATCTACACTGTCGCGGGTTATACCCTTCGATCTCCCAGGCCGACCTACCGTGGTTG
TCTGTTTCCTCATTGGCTCGACCTCACGCTGACTCCAACAGTTCTGTTGGAGTCAGCGTCTACTGATGCAACTTTCAAACCTGAATCTTACAAGTTTGTT
CCCTTCTCTGAATTTCTGACCGTATCACACCTGGCTTCCCCTTCTTGA
AA sequence
>Lus10012525 pacid=23143860 polypeptide=Lus10012525 locus=Lus10012525.g ID=Lus10012525.BGIv1.0 annot-version=v1.0
MWKLCNPAEPAKLFALGTLWTDAEDTRIPGDMLRSFAADLDKCISVGSIYTVAGYTLRSPRPTYRGCLFPHWLDLTLTPTVLLESASTDATFKPESYKFV
PFSEFLTVSHLASPS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10012525
[exp]
0 1
AT3G07310 Protein of unknown function (D... Lus10025896
[exp]
6.6 0.9146
AT1G18330 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-... Lus10031322
[exp]
8.7 0.8947
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Lus10000076
[exp]
11.9 0.9058
AT5G05140 Transcription elongation facto... Lus10039000
[exp]
14.5 0.8919
AT1G69490 NAC NAP, ANAC029, A... Arabidopsis NAC domain contain... Lus10036773
[exp]
17.5 0.8608
AT5G65210 bZIP TGA1 bZIP transcription factor fami... Lus10037550
[exp]
19.4 0.8993
AT5G27830 unknown protein Lus10029881
[exp]
19.7 0.8940
AT5G47040 LON2 lon protease 2 (.1) Lus10001083
[exp]
21.8 0.8786
AT3G02750 Protein phosphatase 2C family ... Lus10021486
[exp]
22.4 0.8789
AT4G29800 PLP8, PLAIVD ,P... PATATIN-like protein 8 (.1.2) Lus10023512
[exp]
23.7 0.8834

Lus10012525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.