Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27170 1186 / 0 ATCLC-B, CLC-B chloride channel B (.1) AT5G40890 1157 / 0 ATCLCA, CLCA, ATCLC-A CHLORIDE CHANNEL-A, chloride channel A (.1.2) AT5G33280 779 / 0 Voltage-gated chloride channel family protein (.1) AT5G49890 755 / 0 ATCLC-C, CLC-C chloride channel C (.1) AT5G26240 498 / 3e-165 ATCLC-D, CLC-D chloride channel D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038118 [exp] 770 / 0 AT5G33280 1140 / 0.0 Voltage-gated chloride channel family protein (.1) Lus10007433 [exp] 757 / 0 AT5G49890 1190 / 0.0 chloride channel C (.1) Lus10024466 [exp] 756 / 0 AT5G49890 1189 / 0.0 chloride channel C (.1) Lus10041567 [exp] 525 / 0 AT3G27170 456 / 1e-156 chloride channel B (.1) Lus10002453 [exp] 516 / 3e-172 AT5G26240 1278 / 0.0 chloride channel D (.1) Lus10010531 [exp] 500 / 4e-166 AT5G26240 1242 / 0.0 chloride channel D (.1) Lus10041568 [exp] 333 / 1e-109 AT5G40890 273 / 1e-87 CHLORIDE CHANNEL-A, chloride channel A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331700 [exp] 1277 / 0 AT3G27170 1259 / 0.0 chloride channel B (.1) Potri.006G064000 [exp] 787 / 0 AT5G33280 1181 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.018G124100 [exp] 782 / 0 AT5G33280 1167 / 0.0 Voltage-gated chloride channel family protein (.1) Potri.003G001500 [exp] 748 / 0 AT5G49890 950 / 0.0 chloride channel C (.1) Potri.004G228300 [exp] 747 / 0 AT5G49890 983 / 0.0 chloride channel C (.1) Potri.T046200 [exp] 731 / 0 AT5G49890 947 / 0.0 chloride channel C (.1) Potri.018G138100 [exp] 724 / 0 AT5G49890 935 / 0.0 chloride channel C (.1) Potri.010G090100 [exp] 520 / 9e-174 AT5G26240 1149 / 0.0 chloride channel D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF00654 [flax] [poplar] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Lus10012526 pacid=23143805 polypeptide=Lus10012526 locus=Lus10012526.g ID=Lus10012526.BGIv1.0 annot-version=v1.0 ATGGCTACAGTAGAAGAAGAACCCACTGCAGTTGCAGAAACTATGGAAGATCATCATCAGCACCAAGAAGAAGAAGAAAGAGACCCAGAAACCAACAGCA GCAACGGTCTACAGCAGCCACTCCTTAAGAGGAACAGAACACTTTCATCTACTCCATTGGCCATTGTTGGTGACAAAGTCTCCTATCTTGAGAGCTTGGA TTATGAGATCAATGAGAATGATCTGTTCAAGCATGACTGGAGGAGCAGATCCAAAGTCCAAGTTCTGCAGTATGTGTTCTCGAAATGGACGCTGGCTTTC CTTGTGGGACTACTCACAGGCTTAATCGCCACTCTCATCAATCTTGCAGTCGAGAACATTGCAGGATACAAGATTCTCGCTGTTGTCAACTTGATTAGGC AACAAAGATACTGGACAGGCTTAGCTTATATGACTGGAGCCAATCTTGCATTGACAACGTTTGCTGCGGTCCTGTGTGTGTTCTTTGCACCAACTGCAGC TGGACCTGGGATTCCTGAAATCAAAGCTTATCTCAATGGTATCGATACCCCGAACATGTTCGGGGCCACAGTTTTGATTGTTAAGATATTCGGAAGCATT GGAGCAGTTTCTGCAGGGCTGGATTTAGGGAAAGAAGGGCCACTGGTGCACATTGGCAGCTGCATTGCTTCCTTGCTAGGACAAGGCGGGCCAGACAACC ACCGTGTCAAATGGCGATGGCTTCGTTACTTTAACAACGACAGGGATAGGCGGGACATAATAACCTGTGGAGCTTCGTCTGGAGTCTGCGCTGCTTTCCG ATCTCCGGTAGGGGGTGTTCTGTTTGCCCTTGAGGAAGTGGCAACTTGGTGGAGAAGTGCACTGTTGTGGAGGACTTTCTTCAGTACAGCCGTGGTAGTG GTCATCCTTCGAGCATTCATCGAGATCTGCAATTCGGGAAGATGTGGGCTGTTCGGAACAGGAGGGTTGATCATGTTCGATGTGAGCAGCGTTACGGTGA CGTATCATGTGATGGATGTCATACCTGTGGTGTTGATTGGGATCATTGGTGGAGTTCTTGGAAGCCTCTATAACCACCTGCTTCACAAGGTCCTCCGACT CTACAACCTCATAAACCAGAAAGGAAAGATTTACAAGCTGCTTCTTGCATTAACCGTTTCAATCTTCACTTCCGTGTGTCTTTATTGTCTCCCATTCCTA GCCAAATGCCAACCTTGTGATCCTTCAATACAAGAAATGTGCCCTACTAATACAAGGTCAGGGAACTTTAAGCAATTCAATTGTCCAGATGGCCACTATA ATGACCTAGCAAGTCTTCTTCTCACCACAAACGACGACGCAGTCAGAAACATCTTCTCTACCAACACCGCCACAGAATTTCACCCCACATCTCTCCTCAT TTTCTTTGTTCTTTACTGCATTCTAGGACTCTTCACTTTCGGCATTGCCGTACCTTCGGGTCTCTTCCTTCCTATCATCCTAATGGGATCAGCTTACGGC CGACTGCTTGGTCTCGCGATGGGATCTTACACCAAAATTGACCAAGGACTTTATGCAGTTCTTGGTGCAGCTTCACTTATGGCCGGATCAATGAGAATGA CGGTATCTCTCTGTGTGATTTTCCTAGAACTCACAAACAACCTCTTGCTATTGCCCATAACAATGATAGTTCTACTCATAGCCAAATCAGTTGGAGACAG TTTCAATCCAAGTATATACGACATTATCCTGGAACTAAAAGGCCTGCCTTTCTTGGATGCCAATCCTGAGCCATGGATGAGAAACTTCACAGTTGGAGAG CTTATTGAATCCAAACCGACGGTAATTACCTTATGTGGGATAGAGAAGGTGTCTCGAATCGTCGAAGTACTTAAGAACACAACACACCATGGATTCCCAG TTGTGGATGAAGGAGTGATGCCACCGGGGGGGCTCACAGCTGGGGCAACAGAACTGAATGGGCTAATCCTGAGAGCTCACCTGGTTCAAGTGCTGAAGAA GAAGTGGTTCCTGCCAGAGAAAAGAAGAACAGATGAGTGGGAAGTGAGAGAAAGATTCTCGTGGATTGAGCTGGCTGAGAGAGAAGTAACGATCGAAGAG GTGACAGTTACCAGGGCAGAAATGGACATGTACGTTGATTTGCATCCCTTCACCAATACAACTCCTTTCACAGTGGTTGAGAGCATGTCAGTAGCAAAGG CAATGGTGCTATTCAGGCAAGTCGGTCTTCGGCACTTGCTCGTAGTTCCCAAGTATCAAGCTGCAGGGATTCCTCCTGTGATTGGTGTTCTGACCAGACA GGATCTAAGAGCATACAACATCTTGACAGCTTTCCCTCATCTGGCAAGATCTAAGAGCAGAGGAAAGCAGAATTAA
AA sequence Show only first row Show all	>Lus10012526 pacid=23143805 polypeptide=Lus10012526 locus=Lus10012526.g ID=Lus10012526.BGIv1.0 annot-version=v1.0 MATVEEEPTAVAETMEDHHQHQEEEERDPETNSSNGLQQPLLKRNRTLSSTPLAIVGDKVSYLESLDYEINENDLFKHDWRSRSKVQVLQYVFSKWTLAF LVGLLTGLIATLINLAVENIAGYKILAVVNLIRQQRYWTGLAYMTGANLALTTFAAVLCVFFAPTAAGPGIPEIKAYLNGIDTPNMFGATVLIVKIFGSI GAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRVKWRWLRYFNNDRDRRDIITCGASSGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVV VILRAFIEICNSGRCGLFGTGGLIMFDVSSVTVTYHVMDVIPVVLIGIIGGVLGSLYNHLLHKVLRLYNLINQKGKIYKLLLALTVSIFTSVCLYCLPFL AKCQPCDPSIQEMCPTNTRSGNFKQFNCPDGHYNDLASLLLTTNDDAVRNIFSTNTATEFHPTSLLIFFVLYCILGLFTFGIAVPSGLFLPIILMGSAYG RLLGLAMGSYTKIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKSVGDSFNPSIYDIILELKGLPFLDANPEPWMRNFTVGE LIESKPTVITLCGIEKVSRIVEVLKNTTHHGFPVVDEGVMPPGGLTAGATELNGLILRAHLVQVLKKKWFLPEKRRTDEWEVRERFSWIELAEREVTIEE VTVTRAEMDMYVDLHPFTNTTPFTVVESMSVAKAMVLFRQVGLRHLLVVPKYQAAGIPPVIGVLTRQDLRAYNILTAFPHLARSKSRGKQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27170		ATCLC-B, CLC-B	chloride channel B (.1)		Lus10012526 [exp]	0	1
AT5G04980			DNAse I-like superfamily prote...		Lus10033398 [exp]	4.7	0.7978
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Lus10002930 [exp]	4.9	0.8225
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002642 [exp]	6.7	0.7658
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10041801 [exp]	6.8	0.7522
AT2G22680		WAVH1	WAV3 homolog 1, Zinc finger (C...		Lus10039634 [exp]	14.4	0.7025
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10005885 [exp]	28.6	0.7763
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	32.6	0.7722
AT2G30210		LAC3	laccase 3 (.1)		Lus10026401 [exp]	48.9	0.7722
AT5G10560			Glycosyl hydrolase family prot...		Lus10004271 [exp]	54.4	0.7249
AT4G05160			AMP-dependent synthetase and l...		Lus10026544 [exp]	80.5	0.7399

Compare expression of checked genes

Lus10012526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.