Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27180 688 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041566 [exp] 931 / 0 AT3G27180 638 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10000172 [exp] 45 / 5e-05 AT3G21300 420 / 3e-146 RNA methyltransferase family protein (.1) Lus10009743 [exp] 46 / 6e-05 AT3G21300 806 / 0.0 RNA methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331900 [exp] 736 / 0 AT3G27180 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G195300 [exp] 45 / 0.0001 AT3G21300 817 / 0.0 RNA methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05175 [flax] [poplar] MTS Methyltransferase small domain
Representative CDS sequence Show only first row Show all	>Lus10012527 pacid=23143900 polypeptide=Lus10012527 locus=Lus10012527.g ID=Lus10012527.BGIv1.0 annot-version=v1.0 ATGCATCTCGGTTCTTTCTCTTCTCGCCTTCCTTTCTCTCCTCCCGTCACCTGCCACGCCACTTCTTCCGCCACTCTCCCCCTCGCCACTCCGGCTACTT CTTTCAAATCCCCCAGGGGACCGCCCTCGACACTCAAGTTAGAAACGAAGGACAAGTGCGCTCTTGACTGCCCTCACTTCCAATCATGCTCCGGCTGCAC TCAGGAGCTCAATCTCCACCGCCCGATCGTCGTCGACGAGGCAGCTCAGTTTTTCAGTGAGCTAGGGGTATCGGATTTCTCCTTCGATAGTTGTAGACTT TGGGGATGGAGGTGTCGAGCGAAGCTGGCAATTCGCGGTACGTCGGCGGACCCTTTAATTGGACTGTACGAGGAGGGCACTCATAACGTTGTCGACATTC CCCTTTGCAAAGCTCATCATCCAAGAATCAATGCTGCCGTTGAACTGCTGAGAAAAGGTATTATTGAGTTGCGGATTCTTCCCTATGATGAAGACCTAGG AACGGGGGACTTGCGATACGTTCAAATGGCTGTTACTACACACAACACATCACTTCCTGCCTCGGATAGATATAGAAATGGTAAAGTGCAAGTTTCTCTT GTTTGGAATACTAGAAACGAGAAATCTCCTAGTACTGAAAAGTTATCCGCCTTAGCTGAGTTTATTTGGAGAAATGGTGGACCAAAGAGTGACGATGAGA TTATTCACTCTGTATGGGCTAATTTCCAGACATCATCTAACAATGTTATATTTGGGAATCGGTGGAGACATCTCTTGGGAGAAAGGGACTTCTGGGAGCA TGTTGGAGGCATTGATGTATCTCTGGTTCCATCTGGCTTTGGGCAAGCTAATACACGTGCTTTCGAATCATTGCTACGGAAGTTGCATAAATATGTACCT CAAGGAGCAACTGTTGCTGATTTGTATGCTGGAGCTGGAGTAATTGGGTTGTCAGTAGCTGCCAATAGGAAATGCAGATCTGTTAAGTGCATTGAGGTTA ACAAAGAGTCAAAGCTATCCTTTGAGAAGACAGCTGAACGTCTTCCAAAGTCTGTAGAGGGCAGCATCAGCTGGCATCAAGCAGACACTTCTGTTGATCC GATTTCTTGGCTTGTGGGCTCTGAAGTAGTCATTGTTGATCCACCAAGAAAGGGATTGGATGCATCTCTTGTTGATGCATTAAAGACTATATCATCTGCC AGCTTCAGAACCAAGTCATCAACCAATAGTTCTCCGGTCAAAGAAGAAAAAAGACCTTGGGTTTTGCGTGCTAAAGAATCATCAGTCCATGTTGGGAGCT CAGCAACTTTGGATGAACCACGAATCCTTCCACAAACACTAATCTATATAAGCTGCGGTTGGGAGAGCTTTAAAGAGGATTGCAAATCTTTGTTGTCTAC AAAGAAATGGCGTCTGGAACAAGCACATGGGTTTAATTTCTTTCCTGGTACTCAGAGCATTGAGGTTCTGGCTGTCTTCAGAAGGAGTCGAGAAGCCAGC CACAAGAAAAAGAAACTAGGAAAGAAGAAAAAATACTCTTGA
AA sequence Show only first row Show all	>Lus10012527 pacid=23143900 polypeptide=Lus10012527 locus=Lus10012527.g ID=Lus10012527.BGIv1.0 annot-version=v1.0 MHLGSFSSRLPFSPPVTCHATSSATLPLATPATSFKSPRGPPSTLKLETKDKCALDCPHFQSCSGCTQELNLHRPIVVDEAAQFFSELGVSDFSFDSCRL WGWRCRAKLAIRGTSADPLIGLYEEGTHNVVDIPLCKAHHPRINAAVELLRKGIIELRILPYDEDLGTGDLRYVQMAVTTHNTSLPASDRYRNGKVQVSL VWNTRNEKSPSTEKLSALAEFIWRNGGPKSDDEIIHSVWANFQTSSNNVIFGNRWRHLLGERDFWEHVGGIDVSLVPSGFGQANTRAFESLLRKLHKYVP QGATVADLYAGAGVIGLSVAANRKCRSVKCIEVNKESKLSFEKTAERLPKSVEGSISWHQADTSVDPISWLVGSEVVIVDPPRKGLDASLVDALKTISSA SFRTKSSTNSSPVKEEKRPWVLRAKESSVHVGSSATLDEPRILPQTLIYISCGWESFKEDCKSLLSTKKWRLEQAHGFNFFPGTQSIEVLAVFRRSREAS HKKKKLGKKKKYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10012527 [exp]	0	1
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	1.0	0.9595
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	1.4	0.9320
AT4G35910			Adenine nucleotide alpha hydro...		Lus10042060 [exp]	2.2	0.9078
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Lus10016758 [exp]	3.5	0.9022
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10023319 [exp]	4.2	0.8942
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009671 [exp]	9.2	0.9264
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Lus10022454 [exp]	11.0	0.8937
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10022398 [exp]	11.2	0.8744
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	11.8	0.9214
AT1G34110			Leucine-rich receptor-like pro...		Lus10017782 [exp]	15.5	0.8817

Compare expression of checked genes

Lus10012527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.