Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27160 91 / 4e-23 GHS1 GLUCOSE HYPERSENSITIVE 1, Ribosomal protein S21 family protein (.1) AT5G63300 57 / 2e-10 Ribosomal protein S21 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041564 [exp] 221 / 2e-74 AT3G27160 140 / 8e-43 GLUCOSE HYPERSENSITIVE 1, Ribosomal protein S21 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331600 [exp] 79 / 1e-18 AT3G27160 135 / 2e-40 GLUCOSE HYPERSENSITIVE 1, Ribosomal protein S21 family protein (.1) Potri.012G092700 [exp] 50 / 7e-08 AT3G27160 79 / 2e-18 GLUCOSE HYPERSENSITIVE 1, Ribosomal protein S21 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01165 [flax] [poplar] Ribosomal_S21 Ribosomal protein S21
Representative CDS sequence Show only first row Show all	>Lus10012528 pacid=23143888 polypeptide=Lus10012528 locus=Lus10012528.g ID=Lus10012528.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTCTACTCTCGCTGTCCAACGTCGTCTCCTTCCTTTCACCCTCCTCCAACACGCCACCGCCCCAGCTCTCCTCTGCATCTTCTGGATTCA CTGGGCGGCAGCGTTTGAGTTCGGGTTTGTCCACCGGACTAACGACTCCGGTGGTGTACCCGTCCCTTGCGAGGTCGAGCACCGTTTGCTTCGATTCGTC GTCGTACAATGTTGAGATAATCGTGGAGGAGGACGAGCCGGAGGAGAGGCTTCTGGGAAGGTTCAGGAGGGAAGTGTTTAGGGCCGGCATCATTCAAGAG TGCAGGCGACGGCGCTACTTCGAGAACAAGCAGGATGAGAAGAAGCGGAGGACTCGCGAGGCTGCTAAGAAGAATCGGAAAAGGCGTCCAATGTCGAGAT TCGGGGACCAGCCATTTGCTCCTCCTCCTGAAGAGACCACAAAGAAGGTTGTAGAGGACGATGGAGACAACTGGGAACTTCCAGCAGGAGGAATTCCTTA TTGA
AA sequence Show only first row Show all	>Lus10012528 pacid=23143888 polypeptide=Lus10012528 locus=Lus10012528.g ID=Lus10012528.BGIv1.0 annot-version=v1.0 MAASLLSLSNVVSFLSPSSNTPPPQLSSASSGFTGRQRLSSGLSTGLTTPVVYPSLARSSTVCFDSSSYNVEIIVEEDEPEERLLGRFRREVFRAGIIQE CRRRRYFENKQDEKKRRTREAAKKNRKRRPMSRFGDQPFAPPPEETTKKVVEDDGDNWELPAGGIPY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Lus10012528 [exp]	0	1
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Lus10041564 [exp]	2.6	0.9485
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10012086 [exp]	4.0	0.9613
AT1G27385			unknown protein		Lus10037024 [exp]	5.1	0.9423
AT1G28150			unknown protein		Lus10012907 [exp]	7.3	0.9005
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	7.7	0.9548
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10007399 [exp]	7.9	0.9541
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10025798 [exp]	10.2	0.9523
AT4G12800		PSAL	photosystem I subunit l (.1)		Lus10002143 [exp]	11.0	0.9514
AT1G18170			FKBP-like peptidyl-prolyl cis-...		Lus10038954 [exp]	12.2	0.9497
AT2G24020			Uncharacterised BCR, YbaB fami...		Lus10015490 [exp]	13.4	0.9449

Compare expression of checked genes

Lus10012528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.