Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01900 588 / 0 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT3G48520 553 / 0 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT5G63450 550 / 0 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT2G27690 379 / 1e-126 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT3G56630 370 / 3e-123 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 367 / 6e-122 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT1G24540 310 / 2e-99 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT1G13140 304 / 5e-97 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2) AT5G23190 304 / 1e-96 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT1G63710 301 / 8e-96 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041562 [exp] 942 / 0 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10014741 [exp] 410 / 1e-138 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033853 [exp] 410 / 1e-138 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 402 / 2e-135 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033852 [exp] 382 / 2e-127 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10036024 [exp] 353 / 3e-116 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Lus10038896 [exp] 296 / 4e-94 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10017394 [exp] 292 / 5e-92 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 291 / 1e-91 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G331100 [exp] 696 / 0 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Potri.012G096800 [exp] 617 / 0 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042100 [exp] 423 / 1e-143 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220900 [exp] 417 / 2e-141 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220700 [exp] 417 / 3e-141 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042200 [exp] 413 / 8e-140 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.016G031700 [exp] 400 / 5e-135 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.010G236700 [exp] 394 / 2e-132 AT2G27690 576 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.009G145400 [exp] 385 / 4e-129 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.004G185300 [exp] 375 / 3e-125 AT2G27690 604 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10012531 pacid=23143853 polypeptide=Lus10012531 locus=Lus10012531.g ID=Lus10012531.BGIv1.0 annot-version=v1.0 ATGAACTTCCCATCTCTTCTCTTCATCTACCTCTCCCTCCTATGCTCTCTCCTCACCACCTTCATCTCCTTCAACCTCCGCCGCCGACCTGCCTCCGCCG TCAACAACCGCCACGGACCCCTGACATACCCTCTCATCGGCTGCCTGATTTCCTTTTACAAGAATCGCCGCCGTCTGCTAGACTGGTACACAACCCTCCT CTCTCAATCACCAACCAACACTATCGTCATAAACCGGCTGGGAGCCAGACGAACAATCGTAACAGCGAACCCGGAAAATGTCGAATATATCCTCAAAACC AACTTCCCAAACTTCCCTAAGGGCAAGCCCTTCACAGAGATCCTCGGGGACTTTCTCGGGTATGGCATTTTCAACGTCGACGGGGAGGCGTGGCGGACGC AGAGGAAGCTTGTGAGTCACGAGTTCACCGCCAAGTCGTTGAAGGAGTTCTTCATCGCGAGGTTGGAGGAAGAAGTGGAGAAGGAGTTAGTGCCGATGAT GGACAGTTTGGCTGAGAGCTCTCAAGTTGTTGACTTGCAAGAGTTGTTGAGTAGGTTGGCTTTTAACATGGTTTGTAGGGTTTCTCTAGGGGTTGATCGT TGTTGTTTAGATCCTTCGGTTCCGGCAAGGCCCCTCTCTCGAGCTTTCGACGCAGCATCGATAATCTGCGCGAGAAGGGGAGCTGAGCCGTTGGTGTTGG TGTGGAAGGTGAAAAGGTTGCTTGGGGTTGGATCGGAGAGGGAGCTCAAGGAAGCTGTGGGTGAGGTTCATAGGGCGGTGTTTGAGATGATTGCTGAAAA GAAGCGCCAGTTGATTAAGGGGATCACAGCCGTTGATGATCAAGATCTTCTGTCGAGGTTGATAGTGGCCGGTTACGACGATGTGGAAATTCGAGATATG GTGATCAGCTTCATCATGGCTGGGAGGGATACCACGTCGGCGGCAATGACGTGGCTCTTCTGGCTGCTTTCTAGTAATCCGACTGTGGAGGAGTCGTTGG TTGAAGAAGCGAGATTGGTTCGAAATGGAAGAGATAATGTGTATGAATCGCTGGAGGAGATGAAATTGTTAAAAGCCTGTTTAAATGAGTCAATGAGGCT GTATCCGCCGGTTGTGTGGGACTCCAAGCATGCCGTGGCCAACGATTTGCTGCCTGACAATACTCCGGTGAGGGCCGGGGATCGAGTGACATACTTTCCA TACGGGATGGGGAGAATGGAGGGGCTTTGGGGGAAGGACTGGTTCGAGTTCAGACCGGAAAGATGGTTTGTTAATGACGAAGAGGATTCGAGCAATAATA ACAACAGACCATCATCAACGTCATCAACAAAAACAACAAGAGTGAATCATGGAAGAGAGCTGAAGAAGGTGTGTCCTTACAAGTACCCAGTATTCCAGGC AGGTCCAAGGGTATGCCTCGGCAAGGAAATGGCCTTCGTTCAGATGACTTACGTGATGGCTTCAATTCTCCGGCGATTCGAGATCAGACCGGTGAGCTCC GACAAGCCGGTCTTCGTGCCGCTGTTGACCGCTCACATGGCCGGCGGGTTGAATGTGCTGGTCAAGAAAAGAGAAGTCGCGGGGACATGTTGA
AA sequence Show only first row Show all	>Lus10012531 pacid=23143853 polypeptide=Lus10012531 locus=Lus10012531.g ID=Lus10012531.BGIv1.0 annot-version=v1.0 MNFPSLLFIYLSLLCSLLTTFISFNLRRRPASAVNNRHGPLTYPLIGCLISFYKNRRRLLDWYTTLLSQSPTNTIVINRLGARRTIVTANPENVEYILKT NFPNFPKGKPFTEILGDFLGYGIFNVDGEAWRTQRKLVSHEFTAKSLKEFFIARLEEEVEKELVPMMDSLAESSQVVDLQELLSRLAFNMVCRVSLGVDR CCLDPSVPARPLSRAFDAASIICARRGAEPLVLVWKVKRLLGVGSERELKEAVGEVHRAVFEMIAEKKRQLIKGITAVDDQDLLSRLIVAGYDDVEIRDM VISFIMAGRDTTSAAMTWLFWLLSSNPTVEESLVEEARLVRNGRDNVYESLEEMKLLKACLNESMRLYPPVVWDSKHAVANDLLPDNTPVRAGDRVTYFP YGMGRMEGLWGKDWFEFRPERWFVNDEEDSSNNNNRPSSTSSTKTTRVNHGRELKKVCPYKYPVFQAGPRVCLGKEMAFVQMTYVMASILRRFEIRPVSS DKPVFVPLLTAHMAGGLNVLVKKREVAGTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10012531 [exp]	0	1
AT2G20080			unknown protein		Lus10012982 [exp]	2.2	0.9398
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027429 [exp]	3.9	0.9155
AT2G37130			Peroxidase superfamily protein...		Lus10015074 [exp]	5.3	0.9325
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033392 [exp]	6.3	0.9185
AT2G25810		TIP4;1	tonoplast intrinsic protein 4;...		Lus10037895 [exp]	7.1	0.9199
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10012436 [exp]	7.7	0.9009
AT5G66590			CAP (Cysteine-rich secretory p...		Lus10016787 [exp]	9.8	0.9039
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10002917 [exp]	10.8	0.9031
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10037685 [exp]	13.8	0.8880
AT3G26590			MATE efflux family protein (.1...		Lus10036851 [exp]	14.5	0.9113

Compare expression of checked genes

Lus10012531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.