Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01910 615 / 0 AT-SO, ATSO, SOX sulfite oxidase (.1.2.3) AT3G27080 224 / 3e-68 TOM20-3 translocase of outer membrane 20 kDa subunit 3 (.1) AT1G27390 204 / 7e-61 TOM20-2 translocase outer membrane 20-2 (.1) AT5G40930 202 / 2e-60 TOM20-4 translocase of outer membrane 20-4 (.1) AT1G77760 193 / 4e-51 GNR1, NIA1 nitrate reductase 1 (.1) AT3G27070 177 / 5e-51 TOM20-1 translocase outer membrane 20-1 (.1.2) AT1G37130 192 / 1e-50 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT5G67360 189 / 3e-50 ARA12 Subtilase family protein (.1) AT1G04110 188 / 6e-50 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT3G14240 184 / 2e-48 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032048 [exp] 632 / 0 AT3G01910 620 / 0.0 sulfite oxidase (.1.2.3) Lus10035213 [exp] 618 / 0 AT3G01910 615 / 0.0 sulfite oxidase (.1.2.3) Lus10041560 [exp] 584 / 0 AT3G01910 546 / 0.0 sulfite oxidase (.1.2.3) Lus10006303 [exp] 377 / 3e-119 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 345 / 5e-107 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 343 / 1e-106 AT5G67360 552 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 342 / 1e-103 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 341 / 8e-103 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10006307 [exp] 326 / 7e-100 AT5G67360 532 / 2e-179 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G330900 [exp] 644 / 0 AT3G01910 686 / 0.0 sulfite oxidase (.1.2.3) Potri.001G330200 [exp] 271 / 5e-86 AT1G27390 215 / 3e-71 translocase outer membrane 20-2 (.1) Potri.001G054900 [exp] 249 / 9e-78 AT1G27390 230 / 4e-77 translocase outer membrane 20-2 (.1) Potri.001G113700 [exp] 265 / 5e-77 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 261 / 7e-76 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 258 / 7e-75 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 249 / 1e-71 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G173400 [exp] 231 / 4e-71 AT3G27080 208 / 2e-68 translocase of outer membrane 20 kDa subunit 3 (.1) Potri.003G118800 [exp] 248 / 7e-71 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.002G256300 [exp] 191 / 5e-51 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF06552 [flax] [poplar] TOM20_plant Plant specific mitochondrial import receptor subunit TOM20 CL0159 [flax] [poplar] E-set PF03404 [flax] [poplar] Mo-co_dimer Mo-co oxidoreductase dimerisation domain CL0072 [flax] [poplar] Ubiquitin PF00174 [flax] [poplar] Oxidored_molyb Oxidoreductase molybdopterin binding domain CL0072 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10012532 pacid=23143847 polypeptide=Lus10012532 locus=Lus10012532.g ID=Lus10012532.BGIv1.0 annot-version=v1.0 ATGGAAATGTCGAACGATTTCGATAGAATCCTATTCTTCGAGCACGCCCGCAAAACCGCCGAGGCTGCCTATGCTAAGAACCCTCTCGACGCCGAGAATT TAACGAGATGGGGTGGATCTCTGTTGGAGCTGGCTCAGTTTCAGAGTATTCCAGATTCGAAGAAGATGATTCTAGATGGAATTTCAAAGTTAGACGAGGC ACTGATGATAAATCCCAAAAAGCATGACACGATTTGGTGCTTGGGCAATGCTCATACATCTTATGCGTTCTTAACCCCTGATGAGAAGGAAGCAGATACT TATTTCAAGAAAGCAACTGTCTACTTTCAGCAAGCTGTTAATGAGGATCCAAACAATGAGCTATACCTCAAGTCTCTAGAAGTGACTGCTAAGGCCCCAG AACTGCACTCTGAGATTCACAAGCACAATTTAGCAGGTCAATTGCCAACATCGACTGGACCTTCTACGTCAACAAGCACAAGGAGTGCGAAGAAGAAGAA CAACAATGACTATATATATGATGTATTCGGATGGGCAATTCTTGCTGTTGGGATTGTTGCTTGGATTGGATATGCCAAGACTCAGCAACCATTCAATGCT GAACCACCTCGTTCGGCCTTGGTAGACTCTTATGTCACACCTGTGGACTTCTTCTACAAGAGAAATCATGGTCCCATTCCGGTGGTGGATGATATCGAAA GATATTCTGTTTCTTTCAAAGGGTTAATTGATACCCACAAGGAGCTCACTATGAGGGATATCAGGTCGCTTCCAAAGTACAATGTCGCGGCCACCTTGCA GTGTGCTGGTAACAGGAGGACTGCCATGAGCAAAGTCAAAACAGTTAAAGGAGTTGGATGGGACATCTCTGCTATTGGAAATGCTGTTTGGGGTGGTGCC AAATTGGCCGACGTTCTTGAACTGGTCGGGATACCCAAGTTCACTGCAGCCACCAAATCTGGTGGGAAGCACGTTGAGTTTGTTAGCATTGATAAGTGCA AGGAGGAGAATGGGGGTCCCTACAAGGCATCAATTCCACTCATTCAGGCCACAAATCCTGAAGCTGATGTCTTAATTGCTTATGAGATGAATGGAGAGAC TTTAAACAGGGATCATGGTTATCCATTAAGGGTGGTTGTCCCAGGTGTTATCGGTGCACGTTCTGTCAAATGGTTGGATTCCATCAACATATTAGCTGGA GAATGTCAGGGCTTCTTTATGCAAAAGGATTACAAAATGTTTCCACCGTCAGTGAACTGGGATAACATCAATTGGTCAACAAGGAGGCCCCAAATGGATT TCCCTGTACAGTGTGCCATTTGCTCCTTGGAGGATCAGACTATTGTGAAGCACCCTGGGAAGGTCACGGTGCGTGGATATGCAGTATCAGGAGGCGGACG TGGTATCGAGCGAGTTGACGTGTCGATCGATGGTGGTACGATCTGGGTGGAAGCTAGCAGGTTCCAGAAGGAAGGTATCCCTTATGTATCAGATGATGAG AAGAGTGACAAATGGGCATGGGTACTTTTTGAAGCTCTAGTGGATGTTCCTCGTAGCACAGAGATTGTGGCAAAAGCAGTGGATTCAGCAGCAAATGTGC AACCCGAAAGTGTGCAAGAAATCTGGAACCTGAGAGGGGTGCTGAACACGTCCTGGCACCGGGTTCAAAACTGTCGAAAACGGAGTAGAAGTGAAAAAGA ACGGCGGAGTAGGCATGCTCCTTCCTGCATCACACATAATGATGGATTGGGAATCGGAGCTTACTTGAACTCCGCAACATCTTATACTGCAGCAGTTTCG TTCCAAGGTACCGTGATTGGCAAGTTGAGTGCTCGACAAGTAGCCTTGTTCTCGTCTAGAGGTCCAAGCAAACAAAGCCCTGGGATCCTGAAACCTGACA TCATTGGTCCTGGGGTGAGCATTCTAGCTGCTTGGGGAGAGTCGGTTGATAATAAAACCGATTCGTTCAATACAATCTCAGGAACTTCAATGTCTTGCCC ATATCTCAGCGGCGTAGCAGCTTTGATCAAGGCAGTTCATCCAGACTGGTCTCCTGCTGCCATAAAGTCGGCCATTTTAACGACTGCTTACACAGTCAAC CGCAGTGGTGAGTCAATCTCCAATCATCAGAATTCCCCTGCTACTGTATTCGACATCGGTTCTGGCCTTGTGGACCCACCAAAAGCTTTCAATCCGGGCT TGGTATACGAATACGATATCCAACAGGATGATTACATTGGTTATCTATTTGGTTTGGGCTATAACAACACGCAAGTTAACATAATTGTGCAGCGCAATGT GAAGTGCTCGAATGAATCTGCGATACCTGAGGCTCAACTGAACTATCCTACGTTTTCTATCTCGCTGAGTTTGAGTGATCAACATACTTAA
AA sequence Show only first row Show all	>Lus10012532 pacid=23143847 polypeptide=Lus10012532 locus=Lus10012532.g ID=Lus10012532.BGIv1.0 annot-version=v1.0 MEMSNDFDRILFFEHARKTAEAAYAKNPLDAENLTRWGGSLLELAQFQSIPDSKKMILDGISKLDEALMINPKKHDTIWCLGNAHTSYAFLTPDEKEADT YFKKATVYFQQAVNEDPNNELYLKSLEVTAKAPELHSEIHKHNLAGQLPTSTGPSTSTSTRSAKKKNNNDYIYDVFGWAILAVGIVAWIGYAKTQQPFNA EPPRSALVDSYVTPVDFFYKRNHGPIPVVDDIERYSVSFKGLIDTHKELTMRDIRSLPKYNVAATLQCAGNRRTAMSKVKTVKGVGWDISAIGNAVWGGA KLADVLELVGIPKFTAATKSGGKHVEFVSIDKCKEENGGPYKASIPLIQATNPEADVLIAYEMNGETLNRDHGYPLRVVVPGVIGARSVKWLDSINILAG ECQGFFMQKDYKMFPPSVNWDNINWSTRRPQMDFPVQCAICSLEDQTIVKHPGKVTVRGYAVSGGGRGIERVDVSIDGGTIWVEASRFQKEGIPYVSDDE KSDKWAWVLFEALVDVPRSTEIVAKAVDSAANVQPESVQEIWNLRGVLNTSWHRVQNCRKRSRSEKERRSRHAPSCITHNDGLGIGAYLNSATSYTAAVS FQGTVIGKLSARQVALFSSRGPSKQSPGILKPDIIGPGVSILAAWGESVDNKTDSFNTISGTSMSCPYLSGVAALIKAVHPDWSPAAIKSAILTTAYTVN RSGESISNHQNSPATVFDIGSGLVDPPKAFNPGLVYEYDIQQDDYIGYLFGLGYNNTQVNIIVQRNVKCSNESAIPEAQLNYPTFSISLSLSDQHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10012532 [exp]	0	1
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10035437 [exp]	1.0	0.8806
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10041638 [exp]	2.0	0.8672
AT1G06450			Polynucleotidyl transferase, r...		Lus10017895 [exp]	2.8	0.8126
AT3G60300			RWD domain-containing protein ...		Lus10024759 [exp]	3.0	0.8337
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10030133 [exp]	4.9	0.8321
AT1G69020			Prolyl oligopeptidase family p...		Lus10032378 [exp]	5.0	0.8318
AT5G40270			HD domain-containing metal-dep...		Lus10013004 [exp]	6.9	0.7951
AT3G15420			Transcription factor TFIIIC, t...		Lus10001401 [exp]	8.8	0.7587
AT5G66005			Expressed protein (.1.2.3)		Lus10035990 [exp]	8.9	0.7797
AT1G53120			RNA-binding S4 domain-containi...		Lus10005545 [exp]	10.4	0.7702

Compare expression of checked genes

Lus10012532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.