Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27930 306 / 1e-104 Protein of unknown function (DUF579) (.1) AT1G67330 305 / 5e-104 Protein of unknown function (DUF579) (.1) AT1G71690 226 / 3e-73 Protein of unknown function (DUF579) (.1) AT1G09610 224 / 2e-72 Protein of unknown function (DUF579) (.1) AT4G09990 213 / 7e-68 Protein of unknown function (DUF579) (.1) AT1G33800 209 / 2e-66 Protein of unknown function (DUF579) (.1) AT2G15440 171 / 2e-51 Protein of unknown function (DUF579) (.1) AT5G67210 157 / 6e-46 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT3G50220 152 / 7e-44 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT4G24910 138 / 1e-38 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037026 [exp] 314 / 1e-107 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 313 / 4e-107 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10011360 [exp] 306 / 2e-104 AT1G67330 350 / 1e-121 Protein of unknown function (DUF579) (.1) Lus10006415 [exp] 304 / 1e-103 AT1G67330 368 / 1e-128 Protein of unknown function (DUF579) (.1) Lus10005822 [exp] 206 / 3e-65 AT4G09990 360 / 6e-126 Protein of unknown function (DUF579) (.1) Lus10005829 [exp] 204 / 2e-64 AT4G09990 360 / 8e-126 Protein of unknown function (DUF579) (.1) Lus10002954 [exp] 200 / 5e-63 AT4G09990 298 / 1e-101 Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 166 / 2e-49 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10027879 [exp] 163 / 2e-48 AT5G67210 299 / 2e-101 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G056300 [exp] 338 / 4e-117 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.003G172300 [exp] 334 / 1e-115 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 218 / 5e-70 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 218 / 7e-70 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 216 / 4e-69 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) Potri.013G102200 [exp] 213 / 6e-68 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.001G302600 [exp] 169 / 2e-50 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 168 / 4e-50 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 162 / 9e-48 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.005G141300 [exp] 161 / 2e-47 AT5G67210 405 / 1e-142 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [flax] [poplar] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10012537 pacid=23143895 polypeptide=Lus10012537 locus=Lus10012537.g ID=Lus10012537.BGIv1.0 annot-version=v1.0 ATGGAGAAGATCAAGATTAGCCGACACTTCTCAAAACACAAGCCCAAATTCCTCGCTGGCATCTTAGCCGCCGCCGTAATCCTCACCATCATTTATTCCT TCGCCGCAATTTATAAACCAACCTACTCCTTACTCATTGGAGGCCAGAATATTAATATTGCCGATGTCGATGATCCCACTCCTACGCAGCTCCAAGCAAT TCTCCACTACGCCACCTCCAGAATCGTCCCGCAGCAAACCCTGGCGGAGATCTGCGTCTCCTCCGCCGTCCTCCGGTCACTCGGCCCCTGCCGATTCCTG GTATTCGGGCTGGGCTACGACTCGCTGATGTGGACTTCACTCAACCCACGTGGAACCACGCTCTTCCTTGAGGAAGACCCCAGGTGGGTCCACTCCATCC TCCGCCAATTCCCAACCTTACGCGCGCGGATTGTCAGGTACACCACGCACCTCCGCCAGGCGGATGAGCTTTTGTCCTCTTACAAGCGCGAACCCAGCTG CTACTTCCCGGAGGCGCGTGGTCTCAGGGGGAACACGAGGTGTAAGCTGGCATTGAGCGCGTTGCCGGACGAGGTGTATGATGAGGAATGGGATGCGATT ATGATAGACGCGCCGAGAGGGTACTTCCCTGAGGCGCCGGGGAGAATGGCGGCGATATACACGGCGGCGGTGATGGCGCGTGGGAGGAGGGGAGATGGGG CGGCGGTGGTGACTAACGTGTTTTTGCACGATGTGAATAGGAGGGTGGAGAAGATGTATGCGGAGGAGTTTTTGTGCAGGAAATATTTAGTGAAAGCTGT TGGGAGGCTTTGGCACTTTCGAATACCATCTTCATCTTCTTCTGCCAACTCTTCCTCTGGTTTTTGCTGA
AA sequence Show only first row Show all	>Lus10012537 pacid=23143895 polypeptide=Lus10012537 locus=Lus10012537.g ID=Lus10012537.BGIv1.0 annot-version=v1.0 MEKIKISRHFSKHKPKFLAGILAAAVILTIIYSFAAIYKPTYSLLIGGQNINIADVDDPTPTQLQAILHYATSRIVPQQTLAEICVSSAVLRSLGPCRFL VFGLGYDSLMWTSLNPRGTTLFLEEDPRWVHSILRQFPTLRARIVRYTTHLRQADELLSSYKREPSCYFPEARGLRGNTRCKLALSALPDEVYDEEWDAI MIDAPRGYFPEAPGRMAAIYTAAVMARGRRGDGAAVVTNVFLHDVNRRVEKMYAEEFLCRKYLVKAVGRLWHFRIPSSSSSANSSSGFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27930			Protein of unknown function (D...		Lus10012537 [exp]	0	1
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	2.0	0.9476
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10041197 [exp]	2.8	0.9410
					Lus10016958 [exp]	3.9	0.9157
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10041341 [exp]	4.0	0.9140
AT5G59050			unknown protein		Lus10001626 [exp]	5.1	0.8979
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10005860 [exp]	6.3	0.8866
AT1G27200			Domain of unknown function (DU...		Lus10013291 [exp]	6.3	0.9072
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	9.5	0.9131
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10001822 [exp]	9.7	0.8868
AT5G67140			F-box/RNI-like superfamily pro...		Lus10039564 [exp]	9.8	0.9021

Compare expression of checked genes

Lus10012537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.