Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40950 224 / 3e-75 RPL27 ribosomal protein large subunit 27 (.1) AT5G15220 94 / 1e-24 Ribosomal protein L27 family protein (.1) AT2G16930 94 / 1e-24 Ribosomal protein L27 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041553 [exp] 331 / 5e-117 AT5G40950 241 / 2e-81 ribosomal protein large subunit 27 (.1) Lus10007170 [exp] 96 / 4e-25 AT5G15220 190 / 3e-63 Ribosomal protein L27 family protein (.1) Lus10010822 [exp] 95 / 6e-25 AT5G15220 191 / 3e-63 Ribosomal protein L27 family protein (.1) Lus10032811 [exp] 39 / 0.001 ND 37 / 0.005
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G329500 [exp] 221 / 6e-74 AT5G40950 253 / 2e-86 ribosomal protein large subunit 27 (.1) Potri.003G009500 [exp] 96 / 3e-25 AT5G15220 201 / 2e-67 Ribosomal protein L27 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01016 [flax] [poplar] Ribosomal_L27 Ribosomal L27 protein
Representative CDS sequence Show only first row Show all	>Lus10012538 pacid=23143815 polypeptide=Lus10012538 locus=Lus10012538.g ID=Lus10012538.BGIv1.0 annot-version=v1.0 ATGGCGACCGCGAGTTTCAGCCTGATTGGTTCTTTCAAAGGCCTGTCTCTCTCTTCCACTTCTCCTTCTTCTTCCTACTTGTTGAAGGCCGATGGCGGTT TAGCCGGATTCGGCCCGAAATGGAGCTCTGTGTCGTTGCCACGCAGAACTGCAATTCCGTTGACGGTCCAAATGGCTCACAAGAAGGGAGCTGGGAGTAC CAAGAATGGCCGTGACTCTCCCGGTCAGCGTCTCGGCGTCAAGATCTACGGTGACCAACTCGCCAAACCCGGAGCAATCATCATCCGCCAGCGTGGCACC AAGTTCCATCCAGGGAATAATGTTGGAATGGGAAAGGACCATACTCTCTTCGCTCTGATCGATGGCCTCGTCAAGTTCGAGAAGTACGGCCCTGATAGAA AGAAAGTGAGTGTATACACACGGGAAGTTCAGCCAGAGAACCCCAACAGCTACCGAGTAAGGAAGCGAGAGCAATTCAGGTTGCAGCGAGAGAAGAAGAA AGCTAAAAAGGAAGCCAGGGAAGGCAGAGTTAGAGTGCCTGAGCCACAATTGGTACTTGCCTCCAACGCAGCAGAAGACAATGCTGCAGAATGTTGA
AA sequence Show only first row Show all	>Lus10012538 pacid=23143815 polypeptide=Lus10012538 locus=Lus10012538.g ID=Lus10012538.BGIv1.0 annot-version=v1.0 MATASFSLIGSFKGLSLSSTSPSSSYLLKADGGLAGFGPKWSSVSLPRRTAIPLTVQMAHKKGAGSTKNGRDSPGQRLGVKIYGDQLAKPGAIIIRQRGT KFHPGNNVGMGKDHTLFALIDGLVKFEKYGPDRKKVSVYTREVQPENPNSYRVRKREQFRLQREKKKAKKEAREGRVRVPEPQLVLASNAAEDNAAEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10012538 [exp]	0	1
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10017100 [exp]	1.0	0.9824
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10016517 [exp]	3.2	0.9664
AT1G67700			unknown protein		Lus10011383 [exp]	3.2	0.9714
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Lus10006949 [exp]	4.2	0.9660
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Lus10037372 [exp]	4.5	0.9705
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10037822 [exp]	5.2	0.9705
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Lus10033424 [exp]	8.9	0.9537
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10015380 [exp]	9.8	0.9526
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Lus10002040 [exp]	10.2	0.9467
AT4G16410			unknown protein		Lus10003907 [exp]	11.0	0.9599

Compare expression of checked genes

Lus10012538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.