Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14130 365 / 2e-126 Peroxidase superfamily protein (.1) AT4G37530 358 / 2e-123 Peroxidase superfamily protein (.1.2) AT5G67400 356 / 6e-123 RHS19 root hair specific 19 (.1) AT4G37520 351 / 5e-121 Peroxidase superfamily protein (.1.2) AT3G49960 342 / 2e-117 Peroxidase superfamily protein (.1) AT4G30170 335 / 2e-114 Peroxidase family protein (.1) AT2G18980 330 / 1e-112 Peroxidase superfamily protein (.1) AT4G17690 271 / 2e-89 Peroxidase superfamily protein (.1) AT5G47000 258 / 1e-84 Peroxidase superfamily protein (.1) AT5G40150 245 / 3e-79 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032035 [exp] 448 / 3e-159 AT5G67400 394 / 3e-138 root hair specific 19 (.1) Lus10035204 [exp] 353 / 9e-123 AT5G67400 270 / 5e-90 root hair specific 19 (.1) Lus10011079 [exp] 354 / 6e-122 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10001442 [exp] 350 / 2e-120 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10039445 [exp] 256 / 2e-83 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10010716 [exp] 254 / 9e-83 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10013955 [exp] 252 / 1e-80 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1) Lus10042144 [exp] 247 / 6e-80 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10004234 [exp] 244 / 7e-79 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G064100 [exp] 438 / 3e-155 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.001G329200 [exp] 431 / 2e-152 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.007G053400 [exp] 358 / 1e-123 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.018G089900 [exp] 355 / 2e-122 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.007G074700 [exp] 289 / 1e-96 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 268 / 4e-88 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.004G052100 [exp] 259 / 1e-84 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 258 / 2e-84 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.001G351000 [exp] 250 / 2e-81 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.011G062300 [exp] 251 / 8e-81 AT2G34060 434 / 1e-152 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10012540 pacid=23143830 polypeptide=Lus10012540 locus=Lus10012540.g ID=Lus10012540.BGIv1.0 annot-version=v1.0 ATGGGGTCAAGCAGAGGTTGCTGCTCCAATGGTACTACCATCACGGCAGCCATGATGATCATGGTGGTGGTTTCAATCACCAGAACGGCGACAGGACAAC AGCTGACGGAGAACTACTACATTGGAAGCTGCCCGAACGTGGAGGCGGTAGTACAGAAGGTGATAGCGGCCAAAGCACGCAAGCAGTTCGCAACCATCCC GGGCACGCTCCGTCTCTTTTTCCATGACTGCTTCGTTACTGGGTGTGACGCTTCAGTAATGGTGGCATCACCGAATGGAGATGCAGAGAAAGATGCTCCG GAGAACCTTTCCCTGGCCGGAGATGGCTTCGACACAATCATAAGAGCCAAAACTGCCGTAGAAGCTGTATGCCCTGGAGTTGTTTCTTGTGCAGACATCA TGGCCATTGCTGCTCGTGATGTCCTAGCATTGGTTGGAGGGCCTTCATTCAAGGTCGAATTGGGGCGAAGAGACGGAGTCATATCCAGTGCATCTCTTGT GGCAGGAAACCTCCCTGAACCGAGCATGTCTCTGCCTCAACTCAATGCCATTTTCGCCAAACACAACCTTACCCAATTCGACATGATCGCCCTGTCGGGA GCCCACACGCTCGGCTTCTCCCACTGCAGCCGTCTATCGAACCGCCTCTACTCGTGGTTGCCAAACTCCTCTGTCGATCCTTCCTTGGATCCGAGCTATT CCCAGGTGCTGATGGACCACTGCCCGCGGGATGCGAACCCTGAGGCTATAGCCGACATGGATCCGACAACTCCGAGGAGATTCGACAATGCCTACTACCA GAACCTGGTTGGTGGTAAGGGCATGTTTACCTCGGACCAGGTGCTGTTTACGGACTCCAGGTCCCAGCCCACCGTGCTGGATTTCGCGAACAATGCTGGC GATTTCAATGCGGCCTTCACAGTGGCGATGAGGAAGCTGGGGCGAGCCGGGGTCAAGACTGGTGGAGAAGGAAGCATTAGGAGTGACTGTACGATTATGA ATTGA
AA sequence Show only first row Show all	>Lus10012540 pacid=23143830 polypeptide=Lus10012540 locus=Lus10012540.g ID=Lus10012540.BGIv1.0 annot-version=v1.0 MGSSRGCCSNGTTITAAMMIMVVVSITRTATGQQLTENYYIGSCPNVEAVVQKVIAAKARKQFATIPGTLRLFFHDCFVTGCDASVMVASPNGDAEKDAP ENLSLAGDGFDTIIRAKTAVEAVCPGVVSCADIMAIAARDVLALVGGPSFKVELGRRDGVISSASLVAGNLPEPSMSLPQLNAIFAKHNLTQFDMIALSG AHTLGFSHCSRLSNRLYSWLPNSSVDPSLDPSYSQVLMDHCPRDANPEAIADMDPTTPRRFDNAYYQNLVGGKGMFTSDQVLFTDSRSQPTVLDFANNAG DFNAAFTVAMRKLGRAGVKTGGEGSIRSDCTIMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14130			Peroxidase superfamily protein...		Lus10012540 [exp]	0	1
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10029360 [exp]	4.2	0.8432
AT4G31680	B3	REM8	Transcriptional factor B3 fami...		Lus10010080 [exp]	7.3	0.8233
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10011875 [exp]	8.5	0.8192
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10018617 [exp]	9.4	0.7710
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Lus10009427 [exp]	14.0	0.8179
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10041652 [exp]	16.7	0.6980
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10011826 [exp]	19.2	0.7966
AT5G35090			unknown protein		Lus10019575 [exp]	20.8	0.7645
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10024584 [exp]	22.3	0.7750
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10012556 [exp]	24.4	0.7412

Compare expression of checked genes

Lus10012540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.