Plant FIBer expression Database

Lus10012544 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G328600
[exp]
46 / 6e-06 AT5G60910 136 / 1e-39 FRUITFULL, AGAMOUS-like 8 (.1.2)
PFAM info
Representative CDS sequence
>Lus10012544 pacid=23143891 polypeptide=Lus10012544 locus=Lus10012544.g ID=Lus10012544.BGIv1.0 annot-version=v1.0
ATGATTGGGAGAAGTCCCCGCTGCAACATCTTCCTTCAACTATCATTTGTTGCTAGCAGTTTGGACAATGTTATCCAGCGATACCAGGCTCACAAAGAAG
CGGATGCAGCTGTTAAAGAGAATACAGACGGAACTGAGTTCAACCTTAGGGTTCAGTCGGCTCATGGTTCTAGCAGAATATTAGGACAACAGTTCGAGTT
TCACCTCACTGGCAGAACTGGAACTAAGCAGATTCCAGCATGTAGGACTCTGGTCCCCGGTCCTGACTTGCTTCAAATGCTTCAGAGGCACCTGGAGGAG
AAGACTGTTGATCAGCTGGATTCCACGGAGCTTGTGCAGCTAGAAAGGAAACTGGAATCCTTGCTCCGAGGGGCCCGAATCCGAAAGGAAGTACCTCCCC
CACCAGAAAATCTGATGATGGAGAACGAGGTAAGATATCTTCCTTTATATAGGAACGAATACGAGCTTTCAGCCATCACCAATCTCCAGAACCAGCAGCA
GCAGGAGGAGGATGTGGGAGAAATTCGAAACCAGCAAATTCAGCAGCAACAACAGCAGCAACTTCTGCTGATGGGAATGCATCTGAACAACTACAACAAT
GGTGGATTCATCCCAATACACCAACTGCAGGTTCATCAGCAACAGCAACATCAACTTTTCCTCATGGGTATGCACTTGAACAACGCCTCAAACAACAACA
ACAACAACAACAACAACAATGATGGATCTGCTTCTGCTGCTGCTGTTGCTACTTCTGCAGTGCCTCTGTTGCAGAGGGATGCCTTTCAGAAGGGCATTCT
TCACTTCTTCTGA
AA sequence
>Lus10012544 pacid=23143891 polypeptide=Lus10012544 locus=Lus10012544.g ID=Lus10012544.BGIv1.0 annot-version=v1.0
MIGRSPRCNIFLQLSFVASSLDNVIQRYQAHKEADAAVKENTDGTEFNLRVQSAHGSSRILGQQFEFHLTGRTGTKQIPACRTLVPGPDLLQMLQRHLEE
KTVDQLDSTELVQLERKLESLLRGARIRKEVPPPPENLMMENEVRYLPLYRNEYELSAITNLQNQQQQEEDVGEIRNQQIQQQQQQQLLLMGMHLNNYNN
GGFIPIHQLQVHQQQQHQLFLMGMHLNNASNNNNNNNNNNDGSASAAAVATSAVPLLQRDAFQKGILHFF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10012544
[exp]
0 1
AT3G28050 nodulin MtN21 /EamA-like trans... Lus10039429
[exp]
2.0 0.9133
AT3G52070 unknown protein Lus10039603
[exp]
3.0 0.9045
AT1G14790 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1... Lus10034391
[exp]
3.9 0.8916
AT3G52070 unknown protein Lus10029504
[exp]
4.0 0.9018
AT4G21380 ARK3 receptor kinase 3 (.1) Lus10037732
[exp]
4.4 0.8672
AT1G65810 P-loop containing nucleoside t... Lus10037353
[exp]
5.7 0.8695
AT5G41850 alpha/beta-Hydrolases superfam... Lus10021037
[exp]
7.1 0.8692
AT3G51880 AtHMGB1, NFD1, ... NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10040192
[exp]
7.3 0.8598
AT4G27290 S-locus lectin protein kinase ... Lus10037731
[exp]
7.4 0.8749
AT2G21370 XK1, XK-1 XYLULOSE KINASE 1, xylulose ki... Lus10041956
[exp]
7.7 0.9058

Lus10012544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.