Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61120 92 / 2e-24 MADS AGL13 AGAMOUS-like 13 (.1) AT2G03710 87 / 4e-23 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 87 / 1e-22 MADS AGL6 AGAMOUS-like 6 (.1) AT5G13790 87 / 1e-22 MADS AGL15 AGAMOUS-like 15 (.1) AT5G15800 86 / 2e-22 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT3G30260 86 / 3e-22 MADS AGL79 AGAMOUS-like 79 (.1) AT4G11880 86 / 3e-22 MADS AGL14 AGAMOUS-like 14 (.1) AT1G26310 86 / 4e-22 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT4G09960 85 / 4e-22 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT4G18960 86 / 5e-22 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041548 [exp] 124 / 3e-39 AT3G61120 92 / 6e-25 AGAMOUS-like 13 (.1) Lus10035029 [exp] 90 / 2e-25 AT5G10140 89 / 7e-24 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10037039 [exp] 87 / 3e-24 AT5G10140 93 / 2e-25 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10005325 [exp] 91 / 6e-24 AT5G13790 249 / 7e-83 AGAMOUS-like 15 (.1) Lus10031665 [exp] 87 / 1e-23 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10017870 [exp] 89 / 2e-23 AT1G69120 212 / 3e-69 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10011349 [exp] 86 / 2e-23 AT5G15800 125 / 3e-37 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10003123 [exp] 84 / 2e-23 AT5G10140 87 / 1e-23 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10039580 [exp] 89 / 3e-23 AT5G13790 246 / 2e-81 AGAMOUS-like 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G328600 [exp] 94 / 1e-25 AT5G60910 136 / 1e-39 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.001G058200 [exp] 91 / 2e-24 AT2G03710 156 / 3e-48 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.006G048700 [exp] 90 / 1e-23 AT3G57390 219 / 2e-71 AGAMOUS-like 18 (.1.2) Potri.009G055700 [exp] 89 / 2e-23 AT5G13790 241 / 9e-80 AGAMOUS-like 15 (.1) Potri.003G170200 [exp] 87 / 3e-23 AT5G65050 134 / 8e-40 MADS AFFECTING FLOWERING 2, AGAMOUS-like 31 (.1.2.3) Potri.003G169850 [exp] 87 / 7e-23 AT2G45650 143 / 5e-42 AGAMOUS-like 6 (.1) Potri.002G151700 [exp] 86 / 1e-22 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.005G155300 [exp] 86 / 2e-22 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.001G058400 [exp] 86 / 3e-22 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G169600 [exp] 86 / 5e-22 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10012545 pacid=23143842 polypeptide=Lus10012545 locus=Lus10012545.g ID=Lus10012545.BGIv1.0 annot-version=v1.0 ATGGGGAGAGGCAAAGTTGAGATGCGCCCGATCGAGGATAAAAGCACTCGCCAGGTGACATTCTCCAAGCGCAAGCGCGGCCTGCTCAAGAAAGCTCAGG AGCTTTCCGTGCTCTGCGGCGTCGAGGTTGCTGTCGTCATCTTCTCCGGCGGCGGAAAGCTTTACGAGTTCTCCGGAGGTGAAAGGTACATCGTTTCTTC CAACTCGAACTCTATTTTATATCATTCTTAA
AA sequence Show only first row Show all	>Lus10012545 pacid=23143842 polypeptide=Lus10012545 locus=Lus10012545.g ID=Lus10012545.BGIv1.0 annot-version=v1.0 MGRGKVEMRPIEDKSTRQVTFSKRKRGLLKKAQELSVLCGVEVAVVIFSGGGKLYEFSGGERYIVSSNSNSILYHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10012545 [exp]	0	1
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10013237 [exp]	3.6	0.7864
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	4.7	0.7829
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10021629 [exp]	7.7	0.7749
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10041096 [exp]	7.7	0.7828
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Lus10038380 [exp]	13.2	0.6850
AT2G17030			F-box family protein with a do...		Lus10012519 [exp]	20.2	0.7343
AT1G29240			Protein of unknown function (D...		Lus10007276 [exp]	20.4	0.7662
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Lus10005223 [exp]	23.7	0.7344
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10023319 [exp]	29.0	0.7640
AT3G01310			Phosphoglycerate mutase-like f...		Lus10015343 [exp]	29.5	0.7246

Compare expression of checked genes

Lus10012545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.