Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13080 171 / 4e-56 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) AT3G01970 157 / 2e-50 WRKY ATWRKY45, WRKY45 WRKY DNA-binding protein 45 (.1) AT1G64000 130 / 2e-39 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT5G41570 129 / 3e-39 WRKY ATWRKY24, WRKY24 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 24, WRKY DNA-binding protein 24 (.1) AT2G46130 121 / 5e-37 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT1G29860 112 / 1e-31 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT4G18170 111 / 7e-31 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT2G47260 110 / 4e-30 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT5G46350 108 / 1e-29 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT1G69310 108 / 1e-29 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041546 [exp] 204 / 3e-68 AT5G13080 171 / 1e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10011346 [exp] 175 / 2e-57 AT5G13080 179 / 1e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10003128 [exp] 174 / 4e-57 AT5G13080 179 / 2e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10007906 [exp] 137 / 1e-41 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10036401 [exp] 135 / 3e-41 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10017067 [exp] 117 / 9e-33 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10037785 [exp] 113 / 3e-31 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004537 [exp] 110 / 9e-31 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10004612 [exp] 108 / 9e-30 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G328000 [exp] 186 / 2e-61 AT5G13080 174 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.017G066860 [exp] 184 / 1e-60 AT5G13080 178 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.001G058800 [exp] 172 / 2e-56 AT5G13080 171 / 2e-55 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.003G169100 [exp] 171 / 5e-56 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.015G099200 [exp] 160 / 1e-51 AT5G13080 154 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.002G164900 [exp] 137 / 3e-42 AT2G46130 172 / 6e-56 WRKY DNA-binding protein 43 (.1.2) Potri.014G090700 [exp] 137 / 5e-42 AT2G46130 169 / 2e-54 WRKY DNA-binding protein 43 (.1.2) Potri.002G193000 [exp] 116 / 1e-32 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.014G118200 [exp] 115 / 2e-32 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.008G103300 [exp] 114 / 1e-31 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10012547 pacid=23143881 polypeptide=Lus10012547 locus=Lus10012547.g ID=Lus10012547.BGIv1.0 annot-version=v1.0 ATGGAAGCGGTTGCAGCAGATCATATTGTAGATCATGACGGAGGATCATCGGGGAGAAAGAAGGTGAAGAAGAGGCCGAAATATGCATTCCAGACAAGGA GTCAAGTTGATATCCTTGATGATGGCTATCGTTGGAGGAAGTATGGTCAAAAGGCTGTCAAGAACAACAAATTCCCTAGGAGCTACTACAGGTGCACATA TCAAGGGTGCAATGTGAAGAAGCAAGTTCAAAGGTTGAACAAAGACGAAGGGGTGGTTATCACCACTTACGAAGGCAACCACACCCATCCTATCGAGAAA CCCAGTGAAAATTTTGAGCATATCCTGAGCCAGATGCAAATCTACACTCCCTTTTGA
AA sequence Show only first row Show all	>Lus10012547 pacid=23143881 polypeptide=Lus10012547 locus=Lus10012547.g ID=Lus10012547.BGIv1.0 annot-version=v1.0 MEAVAADHIVDHDGGSSGRKKVKKRPKYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLNKDEGVVITTYEGNHTHPIEK PSENFEHILSQMQIYTPF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012547 [exp]	0	1
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10009129 [exp]	9.0	0.7803
AT4G16563			Eukaryotic aspartyl protease f...		Lus10007466 [exp]	12.8	0.7765
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	16.1	0.7750
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10037866 [exp]	20.9	0.7680
AT4G14746			unknown protein		Lus10035902 [exp]	21.8	0.7656
					Lus10016158 [exp]	23.5	0.7332
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001659 [exp]	24.0	0.7540
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016225 [exp]	25.6	0.7505
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Lus10016228 [exp]	28.7	0.7281
AT5G05280			RING/U-box superfamily protein...		Lus10036380 [exp]	30.5	0.7471

Compare expression of checked genes

Lus10012547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.