Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27020 1128 / 0 YSL6 YELLOW STRIPE like 6 (.1) AT5G41000 1080 / 0 YSL4 YELLOW STRIPE like 4 (.1) AT1G65730 762 / 0 YSL7 YELLOW STRIPE like 7 (.1) AT5G24380 724 / 0 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT4G24120 724 / 0 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT5G53550 722 / 0 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT3G17650 710 / 0 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT1G48370 705 / 0 YSL8 YELLOW STRIPE like 8 (.1) AT5G45450 229 / 2e-70 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041544 [exp] 1301 / 0 AT3G27020 1134 / 0.0 YELLOW STRIPE like 6 (.1) Lus10035194 [exp] 1231 / 0 AT3G27020 1147 / 0.0 YELLOW STRIPE like 6 (.1) Lus10032024 [exp] 1136 / 0 AT3G27020 1055 / 0.0 YELLOW STRIPE like 6 (.1) Lus10013323 [exp] 759 / 0 AT1G65730 1127 / 0.0 YELLOW STRIPE like 7 (.1) Lus10034177 [exp] 749 / 0 AT1G65730 1115 / 0.0 YELLOW STRIPE like 7 (.1) Lus10043408 [exp] 743 / 0 AT1G65730 1114 / 0.0 YELLOW STRIPE like 7 (.1) Lus10022360 [exp] 732 / 0 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10017406 [exp] 705 / 0 AT1G65730 872 / 0.0 YELLOW STRIPE like 7 (.1) Lus10023240 [exp] 702 / 0 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G327300 [exp] 1143 / 0 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.017G150500 [exp] 778 / 0 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 764 / 0 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.017G151800 [exp] 764 / 0 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069200 [exp] 763 / 0 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069300 [exp] 740 / 0 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.011G055224 [exp] 722 / 0 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G082400 [exp] 684 / 0 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.005G093800 [exp] 683 / 0 AT1G65730 896 / 0.0 YELLOW STRIPE like 7 (.1) Potri.001G084400 [exp] 655 / 0 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10012549 pacid=23143902 polypeptide=Lus10012549 locus=Lus10012549.g ID=Lus10012549.BGIv1.0 annot-version=v1.0 ATGACATGTGCGCCATGCAACCCACCCGTTTCACCCACACGACTCTCCGAAGCGGCATTGTCGGTCACAACGGGAACCGAGATCTCTGAATCGCTCCTCT TGGACTCCGACACGACCAAGCTCGCCGGATCATTGGCCGACGAGCAGGTGCCAGAATGGAAGGAGCAGATTACCATCCGTGGTCTGGTTGTTAGTGCCTT GTTAGGCGGGCTCTTCTGTATAATAACACACAAGCTCAATCTCACCGTCGGTATTATTCCGTCGCTGAATGTCGCCGCCGGTCTGCTCGGCTTCTTCTTC GTCAAGTCCTGGACTGGATTCCTTTCGAAATTGGGGTTCAATGTCACTCCCTTCACCAAGCAGGAGAACACGGTCATCCAGACCTGTGTAGTTGCAAGCT ATGGCCTAGCCTTTAGCGGTGGTTTTGGATCCTACTTGATTGCTTTGGATGAACGAACCTATGAGTTGATTGGTAAGGATTATCCCGGTAATCGGGCGGA AGATGTTATCAACCCTGGGTTAGGGTGGATGATCGGGTTTATGTTCGTGGTCAGCTTTCTCGGGCTTTTTAGCCTTGTTCCCCTCCGAAAGGTTATGGTC ATGGATTATAAGCTTACATATCCAAGTGGGACAGCTACAGCAATGTTGATCAATAGCTTCCATACAGACACTGGAGCTGAGTTGGCTGGGAAACAAGTAA AATGTCTTGGGAAGTACTTAAGTTTAAGTTTGGTTTGGAGCTGCTTTAAGTGGTTTTTCAGTGGTGTTGGAGACTCGTGCGGATTTGACAACTTCCCAAG TCTTGGTCTGACACTTTTCAAGAATTCGTTTTACTTTGACTTCAGTCCAACTTATGTTGGATGTGGTCTTATTTGTCCACACATAGTCAACTGCTCCTGT CTCTTTGGTGCTATCATTTCCTGGGGTTTTCTATGGCCCTTTATCTCTCAACACGCTGGTGACTGGTATCCAGCTGACCTTGGTAGTAATGATTTCAAAG GACTTTATGGATACAAGGTCTTCATATCTATTGCCCTTATCCTCGGGGATGGTCTCTATAATTTAGTCAAGATTATTTGGATAAGTACCAGGGAAATGTG CAATAAAAGCACAAAAGAGCACAACCTTCCTGTTCATACAGAGATTCTAGATGATCATGACTCCAAACTGCTACTGGAGCAAAAGAAAAGAGACGAAGTA TTTCTGAAAGACAGAATACCTACCTGGTTTGGAGCATCTGGATATGTCTGTTTAGCTGCAGTATCAATCGCAACGATTCCACTCATCTTTCCACCTCTCA AATGGTATTTGGTTCTGGCATGCTATGTGATTGCCCCAGCTTTCGCGTTCTGCAACTCCTATGGCACGGGGCTAACAGACTGGAGTTTGACGTCTACCTA TGGAAAAATCGGTCTTTTTGTGATTGCTTCCATAATCGGGCCTAATGGAGGGGTTGTAGGTGGTTTAGCAGCTTGTGGAGTGATGATGTCCATAGTCTCC ACTGCAGCCGATCTTATGCAGGACTTCAAGACAGGATACCTCACTCTATCATCGGCAAAGTCCATGTTCGTGAGCCAGTTGATTGGAACGGCAATGGGGT GTGTAATCGCACCGTTGACTTTCTGGTTATTTTGGACTGCGTTCGATATCGGAGCACCAGATGGACCATACAAAGCCCCCTACGCGGTCATATTTAGGGA AATGGCGATCCTAGGTGTTGAGGGCTTGTCAGAACTTCCCAAGCATTGTCTGGCCATATGCTGCGGATTCTTCGTAGCTGCTTTGGTTATAAATCTACTG AGGGACGTGCTTCCTAGTAAAGTCTCCCAGTTCATTCCAATCCCCATGGCCATGGCAGTCCCGTTCTATATCGGAGCTTATTTTACAGTGGACATGTTTG TTGGGACAGTGATACTGTTTGTGTGGGAACGGATTAATAGGAAGGATTCGGAAGATTTTGCAGGGGCGGTTGCGTCAGGGTTGATATGTGGCGATGGGAT ATGGACCATACCATCAGCAGTGCTATCTCTTTTGAGGGTGAATCCACCCATCTGCATGTACTTCGGCCCTGCTGTGAGCAGCTGA
AA sequence Show only first row Show all	>Lus10012549 pacid=23143902 polypeptide=Lus10012549 locus=Lus10012549.g ID=Lus10012549.BGIv1.0 annot-version=v1.0 MTCAPCNPPVSPTRLSEAALSVTTGTEISESLLLDSDTTKLAGSLADEQVPEWKEQITIRGLVVSALLGGLFCIITHKLNLTVGIIPSLNVAAGLLGFFF VKSWTGFLSKLGFNVTPFTKQENTVIQTCVVASYGLAFSGGFGSYLIALDERTYELIGKDYPGNRAEDVINPGLGWMIGFMFVVSFLGLFSLVPLRKVMV MDYKLTYPSGTATAMLINSFHTDTGAELAGKQVKCLGKYLSLSLVWSCFKWFFSGVGDSCGFDNFPSLGLTLFKNSFYFDFSPTYVGCGLICPHIVNCSC LFGAIISWGFLWPFISQHAGDWYPADLGSNDFKGLYGYKVFISIALILGDGLYNLVKIIWISTREMCNKSTKEHNLPVHTEILDDHDSKLLLEQKKRDEV FLKDRIPTWFGASGYVCLAAVSIATIPLIFPPLKWYLVLACYVIAPAFAFCNSYGTGLTDWSLTSTYGKIGLFVIASIIGPNGGVVGGLAACGVMMSIVS TAADLMQDFKTGYLTLSSAKSMFVSQLIGTAMGCVIAPLTFWLFWTAFDIGAPDGPYKAPYAVIFREMAILGVEGLSELPKHCLAICCGFFVAALVINLL RDVLPSKVSQFIPIPMAMAVPFYIGAYFTVDMFVGTVILFVWERINRKDSEDFAGAVASGLICGDGIWTIPSAVLSLLRVNPPICMYFGPAVSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10012549 [exp]	0	1
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10009549 [exp]	1.4	0.7216
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10016017 [exp]	6.2	0.6637
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10037926 [exp]	9.2	0.6937
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10028547 [exp]	9.2	0.6599
AT3G04950			unknown protein		Lus10000934 [exp]	34.0	0.6345
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10037738 [exp]	43.7	0.5761
AT2G25570			binding (.1.2.3)		Lus10030074 [exp]	54.0	0.5919
AT1G74770			zinc ion binding (.1)		Lus10008628 [exp]	69.0	0.4789
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Lus10020258 [exp]	89.8	0.5627
AT5G67090			Subtilisin-like serine endopep...		Lus10042644 [exp]	97.5	0.5513

Compare expression of checked genes

Lus10012549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.