Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01990 612 / 0 ACR6 ACT domain repeat 6 (.1) AT1G69040 535 / 0 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 490 / 4e-172 ACR5 ACT domain repeat 5 (.1.2) AT1G76990 408 / 1e-139 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G12420 395 / 6e-135 ACR8 ACT domain repeat 8 (.1) AT4G22780 389 / 2e-132 ACR7 ACT domain repeat 7 (.1) AT5G25320 366 / 1e-122 ACT-like superfamily protein (.1) AT5G65890 332 / 1e-109 ACR1 ACT domain repeat 1 (.1.2) AT1G16880 62 / 2e-10 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2) AT5G04740 61 / 5e-10 ACR12 ACT domain repeats 12, ACT domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041543 [exp] 892 / 0 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10036827 [exp] 550 / 0 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10003136 [exp] 463 / 2e-161 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 454 / 6e-158 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10028646 [exp] 401 / 4e-137 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 399 / 1e-133 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10011715 [exp] 375 / 3e-126 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10019191 [exp] 319 / 3e-107 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 244 / 1e-76 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G327000 [exp] 749 / 0 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.008G109200 [exp] 564 / 0 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.010G138600 [exp] 564 / 0 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 564 / 0 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.012G083000 [exp] 527 / 0 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.015G100300 [exp] 519 / 0 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2) Potri.012G102200 [exp] 504 / 1e-177 AT1G69040 473 / 5e-165 ACT domain repeat 4 (.1.2) Potri.001G115600 [exp] 448 / 1e-155 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.001G060100 [exp] 445 / 2e-154 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.003G116600 [exp] 437 / 2e-151 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10012550 pacid=23143827 polypeptide=Lus10012550 locus=Lus10012550.g ID=Lus10012550.BGIv1.0 annot-version=v1.0 ATGGATGATGAATACGCTAAGCTTATCAGGAGGATGAACCCTCCCAGAGTTGTGATCGACAATGATGCTAGCGACGATGCAACTGTTATCCAGGTTGACA GTGTGAACAAGCATGGGATACTTCTGGAAGTTGTGCAAGTGCTTACAGACATGAATCTTGTGATAAAAAAAGCATATATTTCGTCTGATGGTGGATGGTT TATGGATGTGTTCAAAGTCACCGATCAAGATGGCAACAAAATTACAGACGAGGAAGATATCGACTACATCCAGCGGAGACTTGAAAACGATGCAAGTATT CTCCCCACGTTAACTGGTTCTGTTGGGGTGATGCCATCTGAAGAACACACCTCAATTGAACTCACCGGTACAGACCGGCCAGGTTTGCTGTCTGAAGTAT GTGCAGTTCTAGCAGACCTTCAGTGCAATGTCATAAACGCGGAGATATGGACTCATAATGCAAGGGCAGCTGCTGTAGTGCACGTCACCGATCATTCCAC AGGCACTGCTGTGAAAGATCTGAAGCGGCTGGCTACGATCAAGGAACTCCTCTGCAATGTTCTTAAAGGAAACAACGATTTGAATACAGCAAAAACAAAT CTTTCTCCCCCTGGAGCAATGAGCAAAGAAAGAAGATTACATCAGATTATGCTGGCAGATAGGGATTATGAAAGGGTTGGGAGAGTAGGACTTGGGAGTC TGGAAGATAAATCGAGGCCTCATGTTACTGTTTTGAACATCGAGAAAGATTACTCAGTGATCACGATGAGATCAAGGGATCGGCCTAAGCTTCTATTTGA CATTGTCTGTACTCTTACCGACATGGAATATGTTGTCTTCCATGGAATGGTCAACACATCTGGGAGGAAGGAAGCTTATCAGGAATTCTATATCCGGCAT GTGGATGGATTGCCTATAAGTTCGGAAGCTGAGCGTGAGCGTGTGATACAATGCCTAGAAGCAGCCATTGAAAGGAGAGCATATGAGGGACTTGAGCTAG AGCTGTGCACCGAAGACCGAGCTGGTCTTCTCTCAGACATCACAAGGATATTCAGGGAGAACAGCTTGTGCATCAAGAGAGCAGAGATCTCAACTAAAGG AGGTAAAGCTAAAGACAGATTCTATGTCACTGATGTGACTGGAAACTCGGTTGAGCCGCGGATCATAGACTCGATTTGCAGGCAAATTGGACAGACAAAG CTTTTTGTCAAACGCAGCTCTTTAATCCCACCAAGCAATCCATCTGCACAGGAGACAACAATGGGGTACCTCTTTGGAAACCTGTTCAAGGCGCGAACAT TCCAGAATTTCAAAATTGTCGGATCCTACTCGTGA
AA sequence Show only first row Show all	>Lus10012550 pacid=23143827 polypeptide=Lus10012550 locus=Lus10012550.g ID=Lus10012550.BGIv1.0 annot-version=v1.0 MDDEYAKLIRRMNPPRVVIDNDASDDATVIQVDSVNKHGILLEVVQVLTDMNLVIKKAYISSDGGWFMDVFKVTDQDGNKITDEEDIDYIQRRLENDASI LPTLTGSVGVMPSEEHTSIELTGTDRPGLLSEVCAVLADLQCNVINAEIWTHNARAAAVVHVTDHSTGTAVKDLKRLATIKELLCNVLKGNNDLNTAKTN LSPPGAMSKERRLHQIMLADRDYERVGRVGLGSLEDKSRPHVTVLNIEKDYSVITMRSRDRPKLLFDIVCTLTDMEYVVFHGMVNTSGRKEAYQEFYIRH VDGLPISSEAERERVIQCLEAAIERRAYEGLELELCTEDRAGLLSDITRIFRENSLCIKRAEISTKGGKAKDRFYVTDVTGNSVEPRIIDSICRQIGQTK LFVKRSSLIPPSNPSAQETTMGYLFGNLFKARTFQNFKIVGSYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10012550 [exp]	0	1
AT2G28080			UDP-Glycosyltransferase superf...		Lus10021439 [exp]	2.6	0.9076
AT1G67910			unknown protein		Lus10034901 [exp]	3.7	0.9000
AT4G17900			PLATZ transcription factor fam...		Lus10040082 [exp]	4.2	0.9054
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10037084 [exp]	4.9	0.9029
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	6.5	0.8866
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003395 [exp]	7.4	0.9027
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	11.5	0.8884
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	13.9	0.9057
AT1G02610			RING/FYVE/PHD zinc finger supe...		Lus10010011 [exp]	17.2	0.8709
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009678 [exp]	17.7	0.9021

Compare expression of checked genes

Lus10012550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.